Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05610 ATGACCACAACAATATCAATTGAAGATGTTCGTAGAGAAGTGAAGATTTTAAAAGCTCTGTCTGGCCATAGGCATCTCACCAAGTTTCACGATGCTTGCGAGGATGCCAATAATGTGTACATAGTTATGGAATTGTGTGAAGGTGGGGAGCTTCTTGACCGAATTTTGTCAAGGGGAGGAAGGTATACAGAGGAGGATGCAAAAGTTATAGTTTTGCAGATTCTAAGCGTGGTTGCCTTTTGTCATCTTCAAGGTGTTGTGCATCGTGATCTGAAGCCTGAGAATTTCCTCTTCACTTCAAGAAGTGAAGATGCTGATATGAAGCTTATTGATTTTGGTCTGTCTGACTTCATCAGACCAGATGAACGGTTGAATGACATTGTTGGGAGTGCATATTATGTTGCACCTGAGGTCCTTCACAGGTCTTATAGTGTGGAAGCAGATATATGGAGTATTGGTGTTATTACCTACATCTTATTGTGTGGAAGTCGACCTTTTTGGGCACGAACAGAATCTGGAATTTTTCGTGCAGTGCTCAGAGGTGATCCTAAGTATGATGATTTACCTTGGCCATCAGTATCTCCAGAGGCCAAGGACTTTGTTAAAAGGCTCCTAAACAAGGACTACAGGAAAAGAATGACTGCTGCCCAAGCTCTAACTCACCCTTGGTTGAGGGATGATAGCCGTCCTATGACTCCTATCCCTTTAGATATATTAATTTATAAATTGGTGAAGTCTTATCTTCATGCGACACCATTCAAACGTGCAGCAGCAAAGGCTCTCTCAAAAGCCTTGACAGAGGATCAGTTGGTGTATCTAAGAGCACAATTCAGATTGTTGGAACCAAATAGAGACGGGCATGTCACCCTTGACAATTTCAAAATGGCTCTTGTACGTCATGCAACTGATGCCATGAGAGAGTCAAGGGTTCTTGACATCATACACACGATGGAACCACTTGCCTATAGAAAGATGGATTTTGAAGAATTTTGTGCAGCTGCAACTAGCATATATCAATTGGAGGCACTTGATAGGTGGGAGGATATTGCCAGCACTGCTTTTGAGCATTTTGAGAGAGAGGGTAACCGTGTGATATCGATTGAAGAATTAGCAAGAGAGTTAAATCTTGGTCCTTCAGCTTATTCAATTCTCAAAGATTGGATTAGAAATGATGGAAAGCTTAATTTACTTGGATATACAAAATTTTTGCATGGCTTTATTCCCCGAAATTCAATCCCAAGACACCGTTAG 1251 0.4133 MTTTISIEDVRREVKILKALSGHRHLTKFHDACEDANNVYIVMELCEGGELLDRILSRGGRYTEEDAKVIVLQILSVVAFCHLQGVVHRDLKPENFLFTSRSEDADMKLIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSVEADIWSIGVITYILLCGSRPFWARTESGIFRAVLRGDPKYDDLPWPSVSPEAKDFVKRLLNKDYRKRMTAAQALTHPWLRDDSRPMTPIPLDILIYKLVKSYLHATPFKRAAAKALSKALTEDQLVYLRAQFRLLEPNRDGHVTLDNFKMALVRHATDAMRESRVLDIIHTMEPLAYRKMDFEEFCAAATSIYQLEALDRWEDIASTAFEHFEREGNRVISIEELARELNLGPSAYSILKDWIRNDGKLNLLGYTKFLHGFIPRNSIPRHR. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05610 416 SUPERFAMILY EF-hand 254 404 IPR011992 -
Seca2g05610 416 SMART serkin_6 4 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05610 416 Gene3D Transferase(Phosphotransferase) domain 1 51 236 - -
Seca2g05610 416 CDD STKc_CAMK 6 223 - -
Seca2g05610 416 FunFam CDPK-related kinase 1 263 335 - -
Seca2g05610 416 ProSiteProfiles Protein kinase domain profile. 1 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05610 416 ProSiteProfiles EF-hand calcium-binding domain profile. 268 303 IPR002048 GO:0005509
Seca2g05610 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
Seca2g05610 416 Pfam Protein kinase domain 8 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05610 416 SUPERFAMILY Protein kinase-like (PK-like) 8 253 IPR011009 -
Seca2g05610 416 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 386 - -
Seca2g05610 416 Gene3D - 245 404 - -
Seca2g05610 416 FunFam CDPK-related kinase 1 52 241 - -
Seca2g05610 416 Gene3D Phosphorylase Kinase; domain 1 2 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05610 Seca-Chr2 142400798 142408276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05610 1 416 EF-hand Containing Proteins AT2G46700 78.657 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca2g05610 Pkinase 1.5e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05610 - - psat:127132076 759.985