Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05606 ATGACAACACACATTGATCACAGCCTCTGGATCATTGCTCTCGCCTCCAAATGCACACAACAAAACCTTGCTTGGTCCCTCTTCATCATGGCCTCCCTCTGGCTAACCATGACTGTCTTTTACTGGTCTCACCCCGGTGGTCCCGCCTGGGGCAAATACTACTCCACCTGCACCACCTGGACCAAGAGAATCATAAAAACCTCATCACTTCCAATGATTCCTGGTCCCAAAGGATGGCCTCTCATTGGAAGCATCACCCTCATGACTTCTCTTGCTCACCACCGTATTGCAGCAGCCGCAACTGCATGCAGAGGCAGGAGGCTCATGGCCTTCAGCCTCGGCGACACACGTGCCATCGTCACGTGCAACCCTGACGTCGCCAAGGAGATTCTCAACAGCTCCGTCTTCGCGGATCGTCCCGTCAAGGAATCTGCATACTCCCTCATGTTCAACAGGGCAATCGGCTTCGCCCCTTACGGGGTTTACTGGAGAACTCTCCGCAAAATCGCATCCACTCACCTCTTCTGCCCAAAACAAATCAAATCCTCCCAACTTCACCGCTCTAAAATCGCCACCCAAATGGTTGACATGTTCAGAAACAGCCACCACCAACACACCTTACGTGTTCGCCAAGTGCTCAAGAAAGCTTCTCTCAGTAACATGATGTGGTCCGTGTTTGGACAAGAGTATATGCTACATCACTCAAACAAAGAAGAAGAAGAGCTTAGAGAATTAGTGGACGAAGGGTACGACCTGTTAGGTACCCTTGATTGGGGTGACCACCTTCCTTGGCTTGCACATTTTGACGCCCAGAAAATCAGGTTCAGGTGCTCCAACCTCGTCCCCAAGGTGAACCGCTTCGTCGCTAGAATCATCGCCCAGCACCGAGCTCGTACTAAAACCCAATCGAACCATGACTTCGTTGACGTGTTGCTATCCCTTCAAGGACCCGATCAATTATCCGACTCCGATATGATCGCCGTACTTTGGGAAATGATATTTAGGGGAACAGACACCGTGGCGGTTTTGATCGAGTGGATACTAGCGAGGATGGTACTTCATCCAGATGTGCAGTCCAAGGTGCAAGAGGAGCTCGATGCGGTGGTTGGGAGATCACGCGCCGTTGCTGAGGATGACGTGGCGACGCTGGTGTACCTTCCGGCGGTTGTGAAGGAAGTGCTGAGGCTGCATCCCCCTGGCCCACTTCTATCGTGGGCCCGCTTGTCCATAAGCGATACGACCATTGATGGGTATCATGTTCCAGCGGGGACCACTGCTATGGTGAACATGTGGGCTATTTGCAGGGACCCACATGTGTGGAGAGACCCATTAGAATTTATGCCTGAAAGGTTTCTCAATTCCAGTGGCACTGCGGATGACTTCTCCACTATCGGGTCGGATCTCAGGCTCGCTCCATTCGGGTCGGGCAGGAGAGCGTGCCCCGGGAAGGCGCTGGGGTTGGCTACGGTGAGTTTCTGGGTGGCGTCGCTTTTGCACGAGTATGAGTGGCTACCGTACGATGGAGTTGATCTATCGGAGGTGCTGAGGCTCTCTTGTGAAATGGCTAACCCTCTCACTGTTAAACTGCGCCCTAGGCGTAGCTTAAGTGGTTAA 1614 0.5279 MTTHIDHSLWIIALASKCTQQNLAWSLFIMASLWLTMTVFYWSHPGGPAWGKYYSTCTTWTKRIIKTSSLPMIPGPKGWPLIGSITLMTSLAHHRIAAAATACRGRRLMAFSLGDTRAIVTCNPDVAKEILNSSVFADRPVKESAYSLMFNRAIGFAPYGVYWRTLRKIASTHLFCPKQIKSSQLHRSKIATQMVDMFRNSHHQHTLRVRQVLKKASLSNMMWSVFGQEYMLHHSNKEEEELRELVDEGYDLLGTLDWGDHLPWLAHFDAQKIRFRCSNLVPKVNRFVARIIAQHRARTKTQSNHDFVDVLLSLQGPDQLSDSDMIAVLWEMIFRGTDTVAVLIEWILARMVLHPDVQSKVQEELDAVVGRSRAVAEDDVATLVYLPAVVKEVLRLHPPGPLLSWARLSISDTTIDGYHVPAGTTAMVNMWAICRDPHVWRDPLEFMPERFLNSSGTADDFSTIGSDLRLAPFGSGRRACPGKALGLATVSFWVASLLHEYEWLPYDGVDLSEVLRLSCEMANPLTVKLRPRRSLSG. 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05606 537 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 473 482 IPR017972 GO:0005506|GO:0016705
Seca2g05606 537 FunFam Cytochrome P450 78A5 65 532 - -
Seca2g05606 537 PANTHER CYTOCHROME P450 78A7-RELATED 7 533 - -
Seca2g05606 537 CDD CYP78 104 525 - -
Seca2g05606 537 PRINTS E-class P450 group I signature 344 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca2g05606 537 PRINTS E-class P450 group I signature 324 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca2g05606 537 PRINTS E-class P450 group I signature 470 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca2g05606 537 PRINTS E-class P450 group I signature 429 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca2g05606 537 PRINTS E-class P450 group I signature 480 503 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca2g05606 537 PRINTS E-class P450 group I signature 387 405 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca2g05606 537 Pfam Cytochrome P450 74 512 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca2g05606 537 Gene3D Cytochrome P450 60 534 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca2g05606 537 PRINTS P450 superfamily signature 388 399 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca2g05606 537 PRINTS P450 superfamily signature 480 491 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca2g05606 537 PRINTS P450 superfamily signature 471 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca2g05606 537 PRINTS P450 superfamily signature 335 352 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca2g05606 537 SUPERFAMILY Cytochrome P450 73 532 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05606 Seca-Chr2 142359646 142361821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05606 1 534 Cytochrome P450 AT2G46660 66.790 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05606 K20619 - gmx:100799906 831.632