LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g05599	ATGGATACTCTGTCAACCTCTGTTTCAACCCTCAAAATCCCACCAACAAATCGTGAACTCTATCACTTTACAAGATCTCCCTATGCAACCCCAACTCGTCCACCACAACCACAAACCCACGTCTCCTCCACTTCTATACCCAACTTGCTCCCCAAGACCAAGACTTTTTCATACAACAAGCGTTCTTCTTCTTCTTCTTCTCTATCATTCTCCTCCTCAAACACCACCTCCCCACCTCTCAAACTCAAACCATCTTCTTCAATATTCCATCAAAAGCCTGCTACTGGTTATGCAGCAGCTGTCATAGATGTGGCTCAAAACACCAATTCCCTTCACTTGGTTCAAAAGGATGCTAAGAGGCTCTTGAAATTCCTCCAAAATCTGAACTTTCAATCAACTGTGGGTGACCCTTCAATGGTTGAGGAGGTTAAAGGACAAGCCTTGAGAAAGGTGATAGAGCAGGGAAGTTTTCATAGGCATCTGGCTGTCATATTGAAGATGCTGGTGAAGAAGAACAAGGTGGCAATTGTGCAGGAAGTATTGGAAGAGTTCGAGAGGATTTATGATGATCTTTGTGGAACTCAAGTGGTATTGGTTTCGTCTACAACAAAGATGGGGGAAGAACAACTTTGTGGGATTGCTAAGGGCGTGCAGCAAGTAAGTGGGGCTTTCAGGGTGAAGGTAAAGAATTTGGTTCAAGAGAGCTTGCCTTCTTTCACCCTTCAAAGAGATTCTGTAAATGAAACTTTACAATTCAATCACAATCATCAAAGCTCCTACTTTATTTGA	789	0.4297	MDTLSTSVSTLKIPPTNRELYHFTRSPYATPTRPPQPQTHVSSTSIPNLLPKTKTFSYNKRSSSSSSLSFSSSNTTSPPLKLKPSSSIFHQKPATGYAAAVIDVAQNTNSLHLVQKDAKRLLKFLQNLNFQSTVGDPSMVEEVKGQALRKVIEQGSFHRHLAVILKMLVKKNKVAIVQEVLEEFERIYDDLCGTQVVLVSSTTKMGEEQLCGIAKGVQQVSGAFRVKVKNLVQESLPSFTLQRDSVNETLQFNHNHQSSYFI.	263

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g05599	262	Pfam	ATP synthase delta (OSCP) subunit	95	236	IPR000711	GO:0015986\|GO:0046933
	Seca2g05599	262	Gene3D	-	94	185	IPR026015	-
	Seca2g05599	262	MobiDBLite	consensus disorder prediction	35	85	-	-
	Seca2g05599	262	MobiDBLite	consensus disorder prediction	26	85	-	-
	Seca2g05599	262	SUPERFAMILY	N-terminal domain of the delta subunit of the F1F0-ATP synthase	94	191	IPR026015	-
	Seca2g05599	262	PANTHER	ATP SYNTHASE DELTA CHAIN	69	237	IPR000711	GO:0015986\|GO:0046933

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g05599	Seca-Chr2	142296143	142296931	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g05599	94	242	Primary Pumps ATPases	AT4G09650	34.641	2.33e-21	87.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g05599	K02113		-	gmx:100526851	246.514

Showing 1 to 1 of 1 entries