Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05596 ATGGATTCTGGTGCTGTATTGGCATTGCCTGTGAACAATGAATTCAAAACAAGGGAACCTCCAGATTTTGAGGACGACTTTGTAGAGAAAGATCCTACCGGCCGGTATATTCGGTACAAAGAAATCTTGGGCAAGGGTGCTTTCAAGACTGTGTATGATTCTGATACTTGTTATAGGGGCTTTGATGAAGTTAATGGAATAGAAGTTGCTTGGAACCAAGTCCAAATTGATGAAATCTTGCAGTCAGCAGATGATCTTGCAAAATTGTATTCCGAAGTTCATCTATTGAAGTCTCTGAAACATGAAAATATCATAAAGTTCTTTAATTCCTGGATTGATGATAAGAAGAAAACTGTTAACATTATTACTGAGTTATTCACATCTGGAAATTTAAGGCAGTACCGTCAGAAGCATAGATATGTTGACATGAAAGCCATAAAAGGTTGGGCTAGACAAATTCTTCAAGGCTTAGTATATCTTCACAGTCACAAGCCACCTATTATACACAGAGACTTGAAATGTGACAACATCTTCGTCAATGGAAACCATGGAGAAGTTAAGATAGGAGACCTTGGTTTGGCAATTGTCATGCAGCAACCAACTGCTCGAAGTGTTATTGGGACTCCTGAGTTTATGGCTCCAGAACTGTATGAAGAGGAATACAATGAACTTGTTGATGTCTATTCGTTTGGGATGTGCATGTTAGAGATGGTTACTTTTGAGTACCCGTACAGTGAATGCAGAAATCCAGCCCAAATCTATAAGAAAGTTACCTCTGGCATTGAACCTGCATCCCTTAAAAGGGTGAGTGATCCCCAAATAAAGGGGTTTATCAAAAAATGCCTTGTTCCAGCATCCAAGAGATTGTCTGCAGAGGAGCTTCTTAAAGACCCATTTCTGCAAGTTGAGAGTCCAAAGGATCCAATCCTTGATCCCTTACAGTTACCTAGAAAATCTCTAAAAGCTTTAGATCTGTCCAAATCTGGTCATCTATCCATGGACCTAGATGCTGACTACAAACAGATCCCTATGAGTATAAGTGCTGAGAACAGCCAGGGAAGTCCACATTGTCCAGTTCTTGAAGTTCAGAGGACATATAAAAACAATGAGTTTAGGTTGAAAGGGACCAAAAATGATGATAACTCAGTATCATTAATCTTGCGTATTGCTGATTTAAATGGTCAAGTAAGGAATATACATTTTCTCTTTTACATTGACACGGATACTGCAGTCTCTGTTGCCTCAGAGATGGTTGAAAATTTGGAGCTGGCAGATCATGATGTAGCCTTCATAGCTGAGCTCATTGATTACCTGATAATGAAACTTCTACCTGGGTGGAAGCCTTCATCTGATTATTCCTCAAGTGGAGGATTAAGTCTGTGCGATGGCTCTCCAACACTTAGAGATGACCAAACCTTAATGCCATGCCCATGTGGTTCTGTGGTCAGTAGTGTTCCCTCTGAATTGGTTTTTGATCAAGATAGCATTTCTGGGTTTAAAACTACTCAAAGACAAGGTTTTGCGACAACTGAAGTGAGCTGCATATTTAACATTGCTGATAATGCTACTTTTGAGAGTGAGCATAATTCTTCTCCTAGTTTGGCTAGCTTGGAAGATCAATATTCACAAGAATCTGCAGCTTCTGAGATAGTTATTGAAGATGCTTGCATGAAAAATGACAACTGTCTTGATTCTGATATTGATGGGAGTTATAAAGGATTGAGTTGGTCCACCTCCGAACTGGAGCTCGGGGATACATATTTTGAAGGCTGTAAATTGCAGACTACAAATTGCAGTGCTGAAGAAGGGATTATGATAAATGAATTCTCAAAGAACTCTCACACTCCAACCCCAGCTTTTTGTGAAACATCTAATGTTCTGAGCTTGAATAGCAGTTATTCTTCTCTGTCTTTAGCCGACAAAGACATTGACCTTGAACTAAAGCTTGAGCTTGATGCAATCGAGTCTAAGTATCAGCATTGGTTTCAAGAACTTTCTAGAATGAAGTCCGAGACATTGGAAGCCACCAGAAGGAAATGGATTGCCAAGAAGAAACTTGCTGTTCATTAA 2070 0.3957 MDSGAVLALPVNNEFKTREPPDFEDDFVEKDPTGRYIRYKEILGKGAFKTVYDSDTCYRGFDEVNGIEVAWNQVQIDEILQSADDLAKLYSEVHLLKSLKHENIIKFFNSWIDDKKKTVNIITELFTSGNLRQYRQKHRYVDMKAIKGWARQILQGLVYLHSHKPPIIHRDLKCDNIFVNGNHGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTFEYPYSECRNPAQIYKKVTSGIEPASLKRVSDPQIKGFIKKCLVPASKRLSAEELLKDPFLQVESPKDPILDPLQLPRKSLKALDLSKSGHLSMDLDADYKQIPMSISAENSQGSPHCPVLEVQRTYKNNEFRLKGTKNDDNSVSLILRIADLNGQVRNIHFLFYIDTDTAVSVASEMVENLELADHDVAFIAELIDYLIMKLLPGWKPSSDYSSSGGLSLCDGSPTLRDDQTLMPCPCGSVVSSVPSELVFDQDSISGFKTTQRQGFATTEVSCIFNIADNATFESEHNSSPSLASLEDQYSQESAASEIVIEDACMKNDNCLDSDIDGSYKGLSWSTSELELGDTYFEGCKLQTTNCSAEEGIMINEFSKNSHTPTPAFCETSNVLSLNSSYSSLSLADKDIDLELKLELDAIESKYQHWFQELSRMKSETLEATRRKWIAKKKLAVH. 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05596 689 CDD STKc_WNK 35 300 - -
Seca2g05596 689 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 383 439 IPR024678 GO:0004674|GO:0005524
Seca2g05596 689 SMART serkin_6 37 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05596 689 ProSiteProfiles Protein kinase domain profile. 37 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05596 689 Pfam Protein kinase domain 40 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05596 689 FunFam probable serine/threonine-protein kinase WNK9 126 305 - -
Seca2g05596 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Seca2g05596 689 Gene3D Transferase(Phosphotransferase) domain 1 126 305 - -
Seca2g05596 689 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 19 672 - -
Seca2g05596 689 FunFam Probable serine/threonine-protein kinase WNK1 22 124 - -
Seca2g05596 689 Gene3D Phosphorylase Kinase; domain 1 22 124 - -
Seca2g05596 689 Gene3D - 381 450 - -
Seca2g05596 689 SUPERFAMILY Protein kinase-like (PK-like) 31 301 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05596 Seca-Chr2 142284079 142288188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05596 628 689 MAP Kinase Kinase Kinase AT5G41990 41.935 6.02e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca2g05596 Pkinase 4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05596 K08867 - gmx:100272197 926.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05596 2 142284079 142288188 Seca2g05596 2 142284079 142288188 ECH