Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05593 ATGGAAGGGGCAGGTCCAAATTCATGCACAGATAGCAGCAGGGGTGCAGTGTCAGAGAAGAAGACAAGACCACAAGAGCAGCAATTGAATTGTCCAAGGTGCAATTCAACCAACACAAAATTCTGTTATTACAACAACTACAGCCTCACACAACCAAGATACTTCTGCAAGACATGCAGAAGGTATTGGACAGAAGGAGGCTCTCTCAGAAATGTCCCTGTTGGAGGTGGTTCAAGGAAGAACAAGAAGCAGCATCATCTCCTCTCCTCCTCAAAGCTTCCTGACTTAAATCCACCAACAATTCCTAATTCCCAAAACCCTAAAATGCAAGATCTTAATTTGGCTTTCCCAGCTATGGACAAGTATCATCAACACCATTCCATGTCTCCATATGTTGAAATTGCAGGTGATGCCACCACCACTCACCATACCTCAGCAATTGATCTGCTAAGGTCTGCAGGAATGCCTAATTATGTTGCTTCTCCTAATTCCATGATGTCAAGCTCCAATGCACTTTACCCATCATCAGCAGCAGGGTTTCCCATGCAGGAAATGAAACCAAACCTAATTGGCTTTTCAGTTGAAAACAGATCATATGGGGTCCAAGTCCAACAGAATGGTGGGAGTGGAAGACTTTTGTTCCCTTTTGGAGACATGAAGCAACTTTCTACAACTACTGTCCAAGTGGAACCCAGTAAAGAACAACCAAATTCAACTGGATATTGGACTGGAATCATTGGTGAGGGCTCATCATGGTAA 759 0.4374 MEGAGPNSCTDSSRGAVSEKKTRPQEQQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKQHHLLSSSKLPDLNPPTIPNSQNPKMQDLNLAFPAMDKYHQHHSMSPYVEIAGDATTTHHTSAIDLLRSAGMPNYVASPNSMMSSSNALYPSSAAGFPMQEMKPNLIGFSVENRSYGVQVQQNGGSGRLLFPFGDMKQLSTTTVQVEPSKEQPNSTGYWTGIIGEGSSW. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05593 252 MobiDBLite consensus disorder prediction 1 15 - -
Seca2g05593 252 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Seca2g05593 252 MobiDBLite consensus disorder prediction 90 106 - -
Seca2g05593 252 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Seca2g05593 252 MobiDBLite consensus disorder prediction 1 30 - -
Seca2g05593 252 MobiDBLite consensus disorder prediction 70 106 - -
Seca2g05593 252 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 19 167 IPR045174 GO:0003700|GO:0006355
Seca2g05593 252 Pfam Dof domain, zinc finger 27 83 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05593 Seca-Chr2 142264224 142264982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05593 15 252 C2C2-Dof Transcription Factor Family AT3G61850 47.810 1.73e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca2g05593 zf-Dof 3.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05593 - - gmx:778110 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05593 2 142264224 142264982 Seca2g05593 2 142264224 142264982 ECH