Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05592 ATGGGAAGAGCTCCTTGTTGTTCTAAAGTTGGGTTACACAGAGGTCCATGGACTCCTCGGGAAGATGCATTGCTCACCAAGTATATTCAAGCTCATGGAGAAGGCCAGTGGAGATCACTACCAAAAAGAGCTGGGCTTCTCAGATGCGGAAAAAGTTGCAGACTGAGATGGATGAATTATCTGAGACCAGATATAAAGAGAGGAAACATAACAGCCGAAGAAGATGACCTTATTATTAGAATGCATTCACTTCTAGGAAATAGATGGTCCCTCATAGCTGGAAGATTACCGGGACGCACAGATAATGAAATAAAAAACTACTGGAACACTCATCTCAGCAAAAAGCTGAGAAACCAAGGAACAGATCCAAACACACACAACAAGTTAACAGAACCACCAGCTGGTGGGAAGAAGAAGAAAAAGAACAACGGTGACAAGAAGAAAAAGAATAAGGAGAAGATCATTAATATTAACAAAGGTGGGAATGGGATAGTAGATCAGTCAGAGAAGACCTTAGTTTATCTACCAAAAGCTATAAGGGTGAGGGCTATATCATCATCTATACCCAGAACAGAGAGTACTGTCACGTTGGAATCAAATTCAAATAGTGGATCAACGAGTCAACAAGAGAAAGAGGAAGCAAAAATGGGAGAAATGGAAAATGATCATGGGTTTGGAATATTTGGGGAAGATCATGATGATGAGCTGGTCAACAACGAATGCTGCAGGTCTGCAGGTATGGATGATTCAAATAGTAGCCTTGAGAAGCTCTATGAAGAGTACTTGCAGCTCTTGAAGGTTGAAGAAGACAATCCACGCGAATTAGATTCTTTTGCTCAATCTTTATTGGCCTAA 855 0.4094 MGRAPCCSKVGLHRGPWTPREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITAEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLRNQGTDPNTHNKLTEPPAGGKKKKKNNGDKKKKNKEKIININKGGNGIVDQSEKTLVYLPKAIRVRAISSSIPRTESTVTLESNSNSGSTSQQEKEEAKMGEMENDHGFGIFGEDHDDELVNNECCRSAGMDDSNSSLEKLYEEYLQLLKVEEDNPRELDSFAQSLLA. 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05592 284 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca2g05592 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca2g05592 284 CDD SANT 16 61 IPR001005 -
Seca2g05592 284 Gene3D - 14 66 - -
Seca2g05592 284 Coils Coil 251 271 - -
Seca2g05592 284 SMART sant 13 63 IPR001005 -
Seca2g05592 284 SMART sant 66 114 IPR001005 -
Seca2g05592 284 MobiDBLite consensus disorder prediction 190 214 - -
Seca2g05592 284 FunFam Myb transcription factor 11 67 - -
Seca2g05592 284 MobiDBLite consensus disorder prediction 190 210 - -
Seca2g05592 284 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca2g05592 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca2g05592 284 MobiDBLite consensus disorder prediction 115 153 - -
Seca2g05592 284 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 228 - -
Seca2g05592 284 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca2g05592 284 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca2g05592 284 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca2g05592 284 CDD SANT 71 112 IPR001005 -
Seca2g05592 284 Gene3D - 71 156 - -
Seca2g05592 284 FunFam MYB transcription factor 68 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05592 Seca-Chr2 142220531 142222368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05592 1 173 MYB Transcription Factor Family AT2G16720 56.044 3.42e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca2g05592 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05592 K09422 - gmx:778044 366.696