Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05591 ATGGGTTCCCATGGTGATGAGGCAGCGGTGAGGAGCCATCAACCTTGCGCAGCTTGCAGGATGCTACGCCGGAGATGTGACAGTAACTGCATACTTGCTCCATATTTCCCAACTGACGAGGTTGACAAATTTGTTGGAGTGCACAGAGTCTTCGGTGCTAGCAACGTTATCAAAATGATTCAGATGGTGGAGGAGACAAAGAGAGACGATGCTGTTAAAGCCATGGTGTACGAGGCAACAGCGAGGCTCAGAGACCCGGTTTATGGCAGTGCTGGAGCTATTTTGCAGCTTCAGAAGATGATTCAAGAACTGAAAGAGCACCTGGAATCGATGAAAATACGGGTAATACAAGTGCGAGAACAAAAAGAGCAGTTGTTGAGCATCCTCAACAACAAAGCTAATGGACATCTTGATCCTGTATTTGATGGTTACAGCAATTTGCCAGTAGACTTTGATTATCTCATGGCCTCTGCTGATCCACTTGAATTTGCTGTAGAAGCAGGTGACTGGGTACATGCCAATATTAATAATAATAATACTATGTTAACACCCACTTGTTAA 561 0.4474 MGSHGDEAAVRSHQPCAACRMLRRRCDSNCILAPYFPTDEVDKFVGVHRVFGASNVIKMIQMVEETKRDDAVKAMVYEATARLRDPVYGSAGAILQLQKMIQELKEHLESMKIRVIQVREQKEQLLSILNNKANGHLDPVFDGYSNLPVDFDYLMASADPLEFAVEAGDWVHANINNNNTMLTPTC. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05591 186 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Seca2g05591 186 Pfam Lateral organ boundaries (LOB) domain 15 111 IPR004883 -
Seca2g05591 186 Coils Coil 94 121 - -
Seca2g05591 186 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05591 Seca-Chr2 142201828 142202811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05591 15 131 AS2 family AT1G07900 52.137 1.01e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca2g05591 LOB 5.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05591 - - ccaj:109796546 234.572