Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05585 ATGGACCAACAACCACTACCTTGCCCCGAAAATGACGTAACCACCGTCGCCAACAGCCGGAGTACTGGAGGCACGCGCCACCCTCTCTACCGTGGCGTCCGGAAGCGGCGCTGGGGAAGATGGGTGTCGGAAATTAGAGAGCCGCGCAAGAAATCGCGCATTTGGTTGGGTTCTTTTCCGGTGCCGGAGATGGCGGCGAAAGCATACGACGTCGCAGCGTACTGCCTCAAAGGTCGAAAGGCGCAGCTCAACTTTCCCGACGAGGTGGACCACCTGCCAATTCCGACCACCTGCACGGCAAGAGACATTCAGGCGGCAGCGGCCAAGGCGGCGCGTATGATGAAGGCTTCGCCGGCTGATGAGAAAAGTAGCATTGCGTCCGACGGAGATAGCGGCGGCGATGATTTTTGGGGTGAGATTGAGTTGCCGGAACTGATGGACGGTGAGAGTTGCTGGAGTTCTCCGAGCGGGTCGTCGTGGACTTCCTCCGGCGACATCACGGCGTGGCCGGAGGTTGAGCTTTTGCCGCAGCAACCATTCATGGCGTGTCTATAA 555 0.5928 MDQQPLPCPENDVTTVANSRSTGGTRHPLYRGVRKRRWGRWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAYCLKGRKAQLNFPDEVDHLPIPTTCTARDIQAAAAKAARMMKASPADEKSSIASDGDSGGDDFWGEIELPELMDGESCWSSPSGSSWTSSGDITAWPEVELLPQQPFMACL. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05585 184 MobiDBLite consensus disorder prediction 1 26 - -
Seca2g05585 184 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Seca2g05585 184 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Seca2g05585 184 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Seca2g05585 184 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Seca2g05585 184 CDD AP2 28 87 IPR001471 GO:0003700|GO:0006355
Seca2g05585 184 PRINTS Ethylene responsive element binding protein signature 68 88 IPR001471 GO:0003700|GO:0006355
Seca2g05585 184 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Seca2g05585 184 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Seca2g05585 184 MobiDBLite consensus disorder prediction 116 138 - -
Seca2g05585 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 145 - -
Seca2g05585 184 SUPERFAMILY DNA-binding domain 29 88 IPR016177 GO:0003677
Seca2g05585 184 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05585 Seca-Chr2 142141699 142142253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05585 7 184 AP2-EREBP Transcription Factor Family AT1G01250 57.447 2.09e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca2g05585 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05585 K09286 - gmx:100819971 258.07