Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05584 ATGAAGGTTGAGGTGGGTTCAGGGCGCGTGTTATGGGATGATGAAGAGAAAGCCACAGTTGCGGCTGTTCTGGGCGCTAGAGCTTTCGAATTTTTGATCACGAACTCTGTGTCGAATGAGAGTGTGTTAATGGCTGTTGGGAGTGACGATAGCCTGCAGAACAAGCTCTCTGATCTCGTGGACCGTCCCAACATGTCCAATTTCAGTTGGAACTATGCGATTTTCTGGCAACTTTCTCAGTCAAAATCTGGGGACTGGGTTCTGGGTTGGGGAGATGGGTGTTGCAGGGAACCCAACGAGGAAGAAGAAGAGGGTGGAGGAGTTAGAGGAATCCTTAGCCTTCGCATGGAGGATGGGATGCAGCAGAGTTTGAGGAAGAGGGTGCTGCAGAAACTGCACACCACGTTTGGTGGTTCAGACGAGGACAATTACGCTTTTGGCCTTGACCGTGTCACTGACACCGAGATGTTCTTTCTTGCTTCCATGTACTTCTCTTTCCCACGCGGACATGGTGGACCTGGTAAGTGTTTTGCCTCAGGGAAACATTTGTGGATGAAATCTGTTTCTGATTACTGTGTGCGATCTTTCTTGGCTAAATCCGCTGGAATTCAGACAGTTGTTTTAGTACCTACTGATTTGGGAGTGGTTGAGTTGGGTTCTGTGAGAATGCTAACTGAGAGCTTTGAGTTATTACAGGCCATACAATCTGTGTTTTCCACTCAATCATCATACCCTAAGGTGGCTGTGGTGAATAACAAGAGTGATGAGAGTGTCCTTTTTCCTATTGGAGGGGACAATAAGGTTGATGGAGTTCCAAAGGTTGTTGTGAACACAGGTCGTACAACTACTTTCAGGGAGAAGCTTGCTATTAGAAAAATGGAGGATAGGCCATGGGGAGTCCACCCCAATGGGAGTAGCATTAACTTTCCCAATGTTAGAAATGGTGTTCATGGTTCAAATTGGGGAGGAGTCAATCATGGTGTGAGGCAGCCTACTCCAACTCCAAGTCCTGCTGAAATTTTTGCTCATAGGTCCTCCACAACAAGCAATAATGTTCCTGAGGTGGTAGCTAATGGTTTGAGACAGGATTTCAGGCTCAACAACAACTATCAGCTGCAAAGGCAGGTGCAAATGCAAATTGACTTTTCAGGAGCTACTTCAATGCCTTCTGTCAGACCAGTTATTGCTGAATCTGAGCTTTCTGATGTTGAGGCTTCTTGCAAGGAGGAGCAACCTGGTCCTGCTGATGATAGGAGGCCTAGGAAGCGAGGCAGGAAGCCTGCTAATGGAAGGGAAGAACCCCTCAATCATGTGGAAGCTGAGAGGCAAAGGCGTGAGAAGCTGAACCAACGTTTCTATGCATTAAGAGCTGTAGTTCCTAATATCTCCAAGATGGACAAGGCATCATTACTTGGTGATGCCATTGCTTACATCAATGAGCTTCAGGCAAAACTCAAGATCATGGAGTCTGAAAGAGAGAGATTTGGAAGCACTTCAAGGGATGGAAGATCAGAAAGTCATCAGAATATAACTCCTGATGTGGACATTCAAGCTGCAGAAGATGAGGTCATTGTAAGGGTGAGCTGCCCTATTGATGCTCATCCTGTTTCAAAAGTAATCCAAACATTCAAAGAGACACAAATCAGTGTTGTAGAGTCAAAACTCACTGCTTCAAATGATACTATCTTCCACACATTTGTAATTAAGTCCCAAGGATCTGAACAGCTTACAAAGGACAAGTTGATTGCAGCATTTTCTCAAGAATCCAACTCCTTACAGCCATTGTCATCGGTTGGGTAG 1800 0.4567 MKVEVGSGRVLWDDEEKATVAAVLGARAFEFLITNSVSNESVLMAVGSDDSLQNKLSDLVDRPNMSNFSWNYAIFWQLSQSKSGDWVLGWGDGCCREPNEEEEEGGGVRGILSLRMEDGMQQSLRKRVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGHGGPGKCFASGKHLWMKSVSDYCVRSFLAKSAGIQTVVLVPTDLGVVELGSVRMLTESFELLQAIQSVFSTQSSYPKVAVVNNKSDESVLFPIGGDNKVDGVPKVVVNTGRTTTFREKLAIRKMEDRPWGVHPNGSSINFPNVRNGVHGSNWGGVNHGVRQPTPTPSPAEIFAHRSSTTSNNVPEVVANGLRQDFRLNNNYQLQRQVQMQIDFSGATSMPSVRPVIAESELSDVEASCKEEQPGPADDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKIMESERERFGSTSRDGRSESHQNITPDVDIQAAEDEVIVRVSCPIDAHPVSKVIQTFKETQISVVESKLTASNDTIFHTFVIKSQGSEQLTKDKLIAAFSQESNSLQPLSSVG. 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05584 599 SMART finulus 438 487 IPR011598 GO:0046983
Seca2g05584 599 FunFam Transcription factor bHLH13 425 499 - -
Seca2g05584 599 Gene3D - 425 497 IPR036638 GO:0046983
Seca2g05584 599 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 238 IPR025610 -
Seca2g05584 599 Coils Coil 478 498 - -
Seca2g05584 599 CDD bHLH_AtAIB_like 429 506 - -
Seca2g05584 599 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 435 495 IPR036638 GO:0046983
Seca2g05584 599 PANTHER MYC 38 584 IPR045084 GO:0003700|GO:0006355
Seca2g05584 599 Pfam Helix-loop-helix DNA-binding domain 436 482 IPR011598 GO:0046983
Seca2g05584 599 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 432 481 IPR011598 GO:0046983
Seca2g05584 599 MobiDBLite consensus disorder prediction 402 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05584 Seca-Chr2 142114907 142116706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05584 8 599 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 50.722 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca2g05584 bHLH-MYC_N 2.4e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05584 - - adu:107491937 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05584 2 142114907 142116706 Seca2g05584 2 142114907 142116706 ECH
Seca2g05584 2 142114907 142116706 Seca2g05584 2 142114907 142116706 PCT