LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g05581	ATGGAAGCCGAAACTCGACGGAAAATCGAGGAGATGGTGTTGGATATACTAAAGAAATCCAATATAGAAGAGACCACTGAGCTCAGCGTCCGAATCGCTGCCTCGGAGCGACTCGGCATCGACCTCTCCGACCCGGAGAGCAAGCAGCTTGTCAGAACCGTCGTCGAGTCCTATCTTCTCACCGCCGCGGCCGAGGAGAAACCGCCCGAAGAGTCTCAGTCGAGAGAGGCGGTGAAACCTAAGAAGGAGGACTCCGAACGCGTTATTTGCCAGCTATCAAACAGGAGGAATGTGGTGGTCCGAGATTTCAAAGGGACAGCATTGGTGTCAATTAGGGAGTACTATCATAAAGATGGAAAACAGCTTCCCGGTCCTAAAGGGATAAATTTATCTGCTGATCAATGGTCAACCTTCAAGAAGAGTGTTCCCGCCATAGAGGAAGCTATCACAAGGATGGAAGGAAGGATGGGATCAGAGCTTAATGGTGAGAAGAATGGAGAGGTGTCAAATTCAGTTGTTGATGTTGCTCCTCTTGAGCCTGTCCCTATTGAGATCATCCGTTTTGATGGGAAGAATTACGAATTTTGGGCTCAACAGATGGAATTACTCTTGAAACAGATAAAGATTGAATATGTGCTTACTGAACCATGCCCAAATGCTACATTAGGGGAAGATGCAACTGCTGCAGCCAAAGCTTCTGAAAAGAGATGGGTACATGATGATTTAATGTGTCGTCGCAACATCTTGAGCCATTTATCTGATCATCTTTTCAATCAGTATGCAAACAGAAAAATGAGTGCTAAGGAGTTATGGGAAGAGTTAAAATTTGTTTATCAGTTTGAGGAATATGGAACCAAGAGATCCCAGGTGAAAAAGTATATCGAATTTCAGATGGTTGATGAGAAAGCTGTTGTTGAGCAAATTCAAGAATTTAATAGCATTGCAGACTCTATCGTTGCTGCTGGAATGTCTATTGAGGAGAACTTTCATGTCTGTGTCATCATTTCAAAGCTTCCACTATCCTGGAAAGACTTTTGCATCAAGTTAATGCACGAGGAGTACCTACCTTTCTGGAAGTTAATGGAACGTATAAGGATAGAGGAAGAAACTCGCAATGGAGTCAAACAAGTGGGTGAACCTTCTAATGGTTATAGGTTTCGCCAGGCCAATAAAGGTGGAGCCAGGGTAGCTGACAATAACAATAAGCCACCGGGTATGCATAATGCCAAGAGCATCATAGCCTGTTATATTTGTGGAAAGAAGGGGCATCTTTCTAAACACTGCTGGAGAAGATCTGACAAGCAAACTAATGAAAGGAAGGCAATGGAGAGTGTGCGTATATCTACAGCAGTTAATACGACGGCAGTTGAGTAA	1374	0.4396	MEAETRRKIEEMVLDILKKSNIEETTELSVRIAASERLGIDLSDPESKQLVRTVVESYLLTAAAEEKPPEESQSREAVKPKKEDSERVICQLSNRRNVVVRDFKGTALVSIREYYHKDGKQLPGPKGINLSADQWSTFKKSVPAIEEAITRMEGRMGSELNGEKNGEVSNSVVDVAPLEPVPIEIIRFDGKNYEFWAQQMELLLKQIKIEYVLTEPCPNATLGEDATAAAKASEKRWVHDDLMCRRNILSHLSDHLFNQYANRKMSAKELWEELKFVYQFEEYGTKRSQVKKYIEFQMVDEKAVVEQIQEFNSIADSIVAAGMSIEENFHVCVIISKLPLSWKDFCIKLMHEEYLPFWKLMERIRIEEETRNGVKQVGEPSNGYRFRQANKGGARVADNNNKPPGMHNAKSIIACYICGKKGHLSKHCWRRSDKQTNERKAMESVRISTAVNTTAVE.	458

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g05581	457	PANTHER	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR	3	154	IPR045125	GO:0003713\|GO:0060261
	Seca2g05581	457	SMART	c2hcfinal6	414	430	IPR001878	GO:0003676\|GO:0008270
	Seca2g05581	457	ProSiteProfiles	Zinc finger CCHC-type profile.	415	428	IPR001878	GO:0003676\|GO:0008270
	Seca2g05581	457	Pfam	Transcriptional Coactivator p15 (PC4)	90	140	IPR003173	GO:0003677\|GO:0006355
	Seca2g05581	457	Pfam	DEK C terminal domain	5	59	IPR014876	-
	Seca2g05581	457	Gene3D	Transcriptional Coactivator Pc4; Chain A	80	156	IPR009044	GO:0003677\|GO:0006355
	Seca2g05581	457	MobiDBLite	consensus disorder prediction	68	85	-	-
	Seca2g05581	457	Gene3D	-	410	454	-	-
	Seca2g05581	457	ProSiteProfiles	DEK C-terminal (DEK-C) domain profile.	3	60	IPR014876	-
	Seca2g05581	457	MobiDBLite	consensus disorder prediction	64	85	-	-
	Seca2g05581	457	SUPERFAMILY	ssDNA-binding transcriptional regulator domain	89	151	IPR009044	GO:0003677\|GO:0006355
	Seca2g05581	457	Pfam	gag-polypeptide of LTR copia-type	237	372	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g05581	Seca-Chr2	142099164	142102509	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Coactivator p15	Seca2g05581		Retrotran_gag_2	5.6e-17	CL0523

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g05581	-		-	gmx:100800963	579.711