Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05579 ATGTGTCATCAGTGCCAGCGGAATGATAAGAGTGGTGTTGTCTTTTGCTCAAGTTGCAACAGAAAACGCTATTGTTATGAATGCATTGAGAAATGGTACCCAGGAAAAACCCGAGAGGAAGTTGCGAATGCATGTCCATTTTGTTGGGGCAATTGCAACTGCAAAGCTTGCTTACGGGAGGTTCCTGTGCTAAAGTACCCAGAAGTAAATCCCAGTGTCAAAATACAAGGACTGCTGTACTTACTATGTAAAGCCCTGCCAATTCTGAGGCATATTCACAGGGAGCAGAGCTTGGAATTAGAGATTGAAGCCAAAATAAGGGGTAATCAACTGCAAGAAGTTGACATAACAAGAACAAAGCTAGATGAAAATGAGCGCTTGTACTGTGACAATTGCAGTACATCCATAATTGGATTTTACCGTAGCTGCCCCAACACCAGTTGCTCTTATGATCTATGTCTCACGTGCTGTCAAGAGCTCAGAGAGGGTTGCCAACCTGGAGGTGTAGAAGCTGAAACATCTCATGAACAATTTGTAGAGAGTTTTCATAATTGTGATTCAACAAGAATTCAGCATAAAACACATAGTAAAAGATATGGGTGGGAGAGCCAACTTGCACCTGCTAGTTTTGATTTTCAAGCTGACACATTCTCTCCCTTCCCTGAATGGAAAGCTAATAACGATGGTAACATTCCATGTCCTCCTAAGAAGCGTGGAGGTTGTGGTACTGCATTGCTAGAACTAAGACGCATTTACAAAGCTAATTGGGTAGCAAAACTGCTAAATAATGCTGAGGAACTCACTAGAGATTATATGCCACCGGATGTGGATATTACCGGAAAGTGTTCTTTATGCCAGCCAAATTTGGTTAAGGGAAAAGTCAATCCTGAAGTCAGGAGAGCAGCATTCCGGGATGGCAGTAATGATAATTTCTTATATAGCCCAAATGCCCTTGACATTGATGATGAGATTGAGCACTTCCAGAGGCACTGGATGAGGGGAGAACCTGTGGTTGTGAGAAATGTTCTGGACAAGACATCTGGTCTTAGTTGGGAACCAATGGTAATGTGGAGGGCTCTCAGAGAAACAGGTTCCAGAGTGAAGTTCACAGAGGAAACACGTAGTGTAAAGGCCATTGATTGCTTGGATTGGTGTGGGGTTGAGATTAATATTCACCAATTTTTTAAAGGCTACCTAGAGGGTCGAATGCATAAAAGTAAGTGGCCAGAAATGTTGAAATTGAAAGATTGGCCTTCATCAACCTCTTTTGAAGAGCGTTTGCCCAGGCATGGCACTGAATTCCTTGCTGCACTCCCCTATAGGGACTACACTGATCCAAAATCAGGTCTTTTAAATTTTGCCAGTAAACTTCCTGCTAACTCACTTAAACCAGATTTGGGACCCAAAACGTACATTGCTTATGGATTTTCTGAAGAGCTAGGTAGAGGAGATTCTGTGACAAAACTGCACTGTGATGTGTCTGATGCGGTCAATGTGCTGACACACACAAACAAAGTGAATATAGCTCCATGGCAGAGAAAAAGCATAGACAAATTGAAAAAGAAGTATGATGAAAAAGATGCTTATGAACTTTATTGTGAAGCATTACGTGATGTTGATGGAGGATCTAAATCTAAAGCATTGAATCATGATCAAAAGGCAGAGAATGGAGTTAACAGGATTTCACCAAGTAGCCAAATGGATCAGTGCATTTCATTTATAGCTGAAGACTTGAGTGGGAAGTCAGAAACACAGAACACGGAACAGTGTGATGAGAATAGAAATTGCTCTCGGACTGACAGAAATGTCACTATAAGGAGCTCCTCTGTGGAAGATAGTGTTAGTATAACATCTACTGAAGTTTCACATCATTCCAGCTTAGCTTCAAGTAATACGAGCAATAAGAAAGACAGAACAAGGGTTGATATTATAGATGATAATGTGTCTGGTGATCCCAAGTTAGCATCCACACAAGGCCGGGGGAAAGATTCTTTAGAAATTGGAAATGGAGCTGAGGTTGTCCTTGGTGGCGCTGTTTGGGACATTTTCCGTCGGCAAGACGCCCCAAAGCTAATTGAGTACTTAAGAAAGCATAAGAAGGAATTCCGTCATATCAACAATCAACCTGTAGAATCTGTTATACATCCCATTCATGATCAGACTCTATTCTTAAATGAGAGGCATAAGAAACAGCTAAAAAGGGAGTTTAATGTTGAACCATGGACTTTTGAGCAACACCTTGGTGAGGCTGTTTTCATTCCAGCAGGATGTCCTCATCAAGTGAGAAATAGACAATCGTGTATAAAGGTTGCACTTGATTTTGTTTCTCCGGAAAATGTTGGAGAATGTTTACGACTAACTGGAGAGTTTCGTTTGCTCCCAAAATACCACAGAGCCAAGGAGGACAAATTGGAGGTTAAAAAGATGGCCCTTTATGCTGTAAGTAAAGCTGTTAGAGAAATCAAAGAACTGATGAAGGTCACTGAGTAA 2490 0.4137 MCHQCQRNDKSGVVFCSSCNRKRYCYECIEKWYPGKTREEVANACPFCWGNCNCKACLREVPVLKYPEVNPSVKIQGLLYLLCKALPILRHIHREQSLELEIEAKIRGNQLQEVDITRTKLDENERLYCDNCSTSIIGFYRSCPNTSCSYDLCLTCCQELREGCQPGGVEAETSHEQFVESFHNCDSTRIQHKTHSKRYGWESQLAPASFDFQADTFSPFPEWKANNDGNIPCPPKKRGGCGTALLELRRIYKANWVAKLLNNAEELTRDYMPPDVDITGKCSLCQPNLVKGKVNPEVRRAAFRDGSNDNFLYSPNALDIDDEIEHFQRHWMRGEPVVVRNVLDKTSGLSWEPMVMWRALRETGSRVKFTEETRSVKAIDCLDWCGVEINIHQFFKGYLEGRMHKSKWPEMLKLKDWPSSTSFEERLPRHGTEFLAALPYRDYTDPKSGLLNFASKLPANSLKPDLGPKTYIAYGFSEELGRGDSVTKLHCDVSDAVNVLTHTNKVNIAPWQRKSIDKLKKKYDEKDAYELYCEALRDVDGGSKSKALNHDQKAENGVNRISPSSQMDQCISFIAEDLSGKSETQNTEQCDENRNCSRTDRNVTIRSSSVEDSVSITSTEVSHHSSLASSNTSNKKDRTRVDIIDDNVSGDPKLASTQGRGKDSLEIGNGAEVVLGGAVWDIFRRQDAPKLIEYLRKHKKEFRHINNQPVESVIHPIHDQTLFLNERHKKQLKREFNVEPWTFEQHLGEAVFIPAGCPHQVRNRQSCIKVALDFVSPENVGECLRLTGEFRLLPKYHRAKEDKLEVKKMALYAVSKAVREIKELMKVTE. 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05579 829 ProSiteProfiles Zinc finger RING-type profile. 2 48 IPR001841 -
Seca2g05579 829 Gene3D Cupin 309 800 - -
Seca2g05579 829 MobiDBLite consensus disorder prediction 601 662 - -
Seca2g05579 829 SMART cupin_9 427 791 IPR003347 -
Seca2g05579 829 FunFam Transcription factor jumonji (JmjC) domain-containing protein 608 800 - -
Seca2g05579 829 MobiDBLite consensus disorder prediction 601 634 - -
Seca2g05579 829 SUPERFAMILY Clavaminate synthase-like 324 814 - -
Seca2g05579 829 Pfam JmjC domain, hydroxylase 677 774 IPR003347 -
Seca2g05579 829 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 826 IPR045109 GO:0032454|GO:0033169
Seca2g05579 829 ProSiteProfiles JmjC domain profile. 446 791 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05579 Seca-Chr2 142088110 142094043 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca2g05579 JmjC 3.1e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05579 K15601 - cave:132187182 1061.6