Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05576 ATGGAATCGAGTAGTCTTGAGAGCACTGTGTTATCCTTGACTATGATGGAAGAGGATGAGCATACTCATCAGTTTTCTTCAATCTCGAAGCTACATAACAATGCTCCCACCACTACCAGTGTCCATGACCTTCTTGAATGCCCCGTTTGCACAAATTCAATGTACCCTCCAATCCATCAGTGCCATAATGGCCATACCCTTTGTTCAACTTGCAAGACAAGGGTACACAATCGATGCCCAACTTGCAGGCAGGAACTCGGTGATATAAGGTGTCTAGCATTGGAGAAGATAGCAGAATCACTTGAACTGCCTTGCAGATACATCTCTCTTGGGTGTCCAGAGATATTTCCCTATTACAGCAAACTCAAACATGAGGCTATTTGTAACTTTAGACCATACAATTGCCCTTATGCTGGGTCAGACTGCTCTGTAGTTGGGGACATTCCATACCTTGTTGCTCATCTAAGGGATGATCACAGGGTTGACATGCATTCTGGATGCACTTTTAACCATCGCTATGTCAAGTCTAATCCACTGGAAGTAGAAAATGCTACATGGATGTTAACGGTTTTCCATTGCTTTGGTCAGTATTTTTGCCTCCATTTTGAAGCATTCCAGCTTGGTGTGGCTCCTGTTTACATGGCATTTCTCAGATTCATGGGTGATGAAAGAGAGGCAAGGAACTACAGTTACAGCCTGGAGGTGGGAGGAAATGGACGTAAACTAACTTTTGAAGGGAGTCCAAGAAGCATTAGAGATAGCCATAAGAAAGTCAGAGACAGTCATGATGGCCTCATCATATACCGTAATATGGCACTTTTCTTCTCAGGTGGTGACAGGAAAGAGTTGAAGCTACGAGTCACAGGAAGGATATGGAAAGAACAGCAAAACCCTGAAGGTGGTGTGTGCATACCCAACCTGTGCAGCTAG 930 0.4419 MESSSLESTVLSLTMMEEDEHTHQFSSISKLHNNAPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSVVGDIPYLVAHLRDDHRVDMHSGCTFNHRYVKSNPLEVENATWMLTVFHCFGQYFCLHFEAFQLGVAPVYMAFLRFMGDEREARNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLCS. 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05576 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 99 IPR013083 -
Seca2g05576 309 CDD Sina 161 289 - -
Seca2g05576 309 FunFam E3 ubiquitin-protein ligase SINAT3 97 155 - -
Seca2g05576 309 CDD RING-HC_SIAHs 45 83 - -
Seca2g05576 309 SUPERFAMILY RING/U-box 35 86 - -
Seca2g05576 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 155 IPR013083 -
Seca2g05576 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 170 288 IPR008974 GO:0005515
Seca2g05576 309 ProSiteProfiles Zinc finger SIAH-type profile. 100 160 IPR013010 GO:0008270
Seca2g05576 309 ProSiteProfiles Zinc finger RING-type profile. 47 83 IPR001841 -
Seca2g05576 309 Pfam Seven in absentia protein family 89 288 IPR018121 GO:0005737|GO:0006511|GO:0007275
Seca2g05576 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 30 294 - -
Seca2g05576 309 FunFam E3 ubiquitin-protein ligase SINAT5-like 156 288 - -
Seca2g05576 309 SUPERFAMILY TRAF domain-like 100 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05576 Seca-Chr2 142060947 142064142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05576 27 295 C3H Transcription Factor Family AT2G41980 76.952 2.50e-159 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05576 K04506 - gmx:100792687 636.336