Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca2g05568 | ATGATAATTAAGCGGACTATGAAAGCTGAAATGCTGAACGTGAAGCGTTGTAAGCTAGAAGAAGACGAGGACTATGAGTATTCGGCGATTCAGAAGAAACAGAGGGTGAACGGGTTTGGTTCTGTTGCTGACGGGTATTCTGGGTCAGGGTCCAGTGAAGGATCAAATTGTGGTGGTGAGGTCCACTTCAATTCAAATTCTATGGAGTTGAATGGTGCAAATATAAAAGCACCTCCATTATTGCGGTCATCGAGAGGTCGCGTTCAGATGCTTCCAGCCAGGTTCAGCGACTCGGTTCTTGATATATGGAAGAATAATGGACGAATCAAAATAGAAGACAAACGCTCCGGCTTTGTAGAAGATGATAATAGTTTACGAGATATTGGACTGGGATTTGAGAAACAGGGAAAGAGAAATAAATGTAGCTCAAAAAATTCTCCTTGTTTTCCTGATTCTGCTGAAATAGAATTGGGTGGATTAGGTTTCAACGATTTTGACTACGAGAAGCATGCCAACTCGTTTAAGAGCATTAAAACGACAGTCAATGGGGGTCGTTCGTTGTTGGTTAAAACAGAGAGTAATGGCATTGGTGGAAATGCCAAAAGAAGGAAAGACATTTATAAACTAGAGGATTTTGCTTTGGGTGATATAGTTTGGGCAAAATGTGGGAAACAATATCCGGCGTGGCCTGCTGTGGTGATTAATCCCATCTTACAAGCTCCCAAGTCTGTTCTCAACTGTTGTGTTCCTGGTGCAATTTGCGTTATGTTTTTTGGTTATTCAAAAAACGGAAAGCAAAGGGACTATGCGTGGGCGAAGCAGGGGATGATATTCCCATTCTTGGAATTCATGGACAGGTGTGTATGTGAACAACATATGGAGAATATATTCCAGGGGCAGACCCGATTGTACAAGAGCAAACTGAGTGACTTTCACATGGCAATGGAGGAGGCAATGCTGGCAGAAGATGGCATTTTGGACACACACTTGGGAACTGAGCAAATTATGGATTGTGCAGCAGGTTCCTGTGTTGATCAGGAATATAGCCACCAAAACCAGGATACAATATCTTGTGCTGGCTGTGGTCTGATGTTGCCATGCAAAACCAAGAAGAAGATTAAGGATTCAAGCTGTGCTCCTCAGCATTATTGTAAACCCTGTGCAAAGTTACTAAAATCAAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGAATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAACAAACTTTTCAAGGATCTGGAAAATATAGATTACTACTGCCCAGATTGCAAGGGAAAGTTTACCGGTAAATTATCGGCATCACAAACATACAAATCAAAAATTAAATCAATAGAGAATAGCCAAAAGCCTGTGTTACCTGAAAAGCTACCGGTGTTGTGCAATGGCATGGAAGGAATTTATATTCCAAAGCTTCATTTAGTCATGTGCAAGTGTGGCTTGTGTGGTTCAAGGAAGCAGACAGTGACTGAATGGGAACGGCATGCAGGTTGCAGAGCCAAAAAATGGAAATATAGTGTGAAAGTAGAAAGCACAAAGCAACCACTAATAAAATGGATCACAGAACACAATTCCCAAGCTGGAATTTTTCGACAATTAGATCAGAAACAGGTGCTTTCCTTTTTGCAAGAGACGTATGAGCCAGTTTATGCAAAATGGACAACAGAAAGATGTGCGATTTGTAGATGGGTTGAAGATTGGGAAGATAACAAAATTATTATCTGTAACAGGTGCCAAATTGCAGTCCACCAAGAGTGCTATGGGGCAAAGAATGTTCAAGATTTTACTTCCTGGGTTTGTAGAGTCTGTGAAACTCCTGGTGTTGAAAGAGAGTGTTGCCTCTGTCCAGTAAAAGGTGGTGCACTGAAGCCAACTGATGTGGAGATGTTGTGGGTTCACGTAACATGCGCTTGGTTTCGGCCTGAAGTTCTTTTTCAAAACCATGAGGCAATGGAACCTGCTTCTGGAATCCTTAAGATTCCTCCTGATTCCTTTTTGAAGACATGCGTGATCTGTAAACAAAGCCATGGTTCCTGTACAAGTTGTTGCAAGTGTGCGACATATTTTCATGTGATGTGCGCCTCGAGAATGGGATATAGCATGGAATTGCATTCTACAGAGAAGAATGGGACTCAAATAACAAAGACACTGATATATTGTGCAGTTCACAGGGTCCCAAATCCAGATTCAGTACTGGTTGTGCATACACCCCAAGGGACATTCTCTCCAAGAACCTCGCTTCAAAATCACAAGGGATGCTTTAGAGGATCAAGGACGGCTTCGTCACAGAATATAGAACTACTTGAATCTTCAACCTCTGAAAGTTATGAGGTTGAGCCACTATCTGCTGCCAGGTGTCGTGTGTACAAAAGGTCTTCCTATAAGAAAGATGATGGACCAATACTTTACTTGCTTGGGGGGCCAAACATTCATTCTTTAGGTGCAATAACTCAATTGAACAGCAACAAGGATGCTGAAATATTTTCTTCTTTCAAGGAACGTCTTCGCCATTTACAAAAAACAGAAAATCATAGAGTTTGCTTTGGAAAGTCAGGTATTCATGGATGGGGCCTCTTTGCCCGTAGAGATTTGCAAGAAGGAGAAATGGTTATTGAGTATCGTGGTGAGCAGGTAAGGCGTAGTGTTGCTGATCTGAGGGAAGCGAAATACCGTTCAGAAGGCAAAGATTGTTATCTGTTCAAGATTAGTGAAGAAGTGGTAATTGATGCAACGGATAAGGGCAATATGGCACGTTTAATAAACCATTCTTGCATGCCAAACTGCTATGCAAGGATTATGAGTTTAGGTGATCAGGAGAGCCGGATTGTTCTTATTGCCAAGACCAATGTCTCTGCTGGTGAAGAACTAACGTATGATTACTTGTTCGATCCAGATGAGCGGGATGAACTCAAGGTTCCCTGCCACTGCAAAGCTCCCAGATGTAGGAAATTTATGAATTAG | 3030 | 0.4188 | MIIKRTMKAEMLNVKRCKLEEDEDYEYSAIQKKQRVNGFGSVADGYSGSGSSEGSNCGGEVHFNSNSMELNGANIKAPPLLRSSRGRVQMLPARFSDSVLDIWKNNGRIKIEDKRSGFVEDDNSLRDIGLGFEKQGKRNKCSSKNSPCFPDSAEIELGGLGFNDFDYEKHANSFKSIKTTVNGGRSLLVKTESNGIGGNAKRRKDIYKLEDFALGDIVWAKCGKQYPAWPAVVINPILQAPKSVLNCCVPGAICVMFFGYSKNGKQRDYAWAKQGMIFPFLEFMDRCVCEQHMENIFQGQTRLYKSKLSDFHMAMEEAMLAEDGILDTHLGTEQIMDCAAGSCVDQEYSHQNQDTISCAGCGLMLPCKTKKKIKDSSCAPQHYCKPCAKLLKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISNKLFKDLENIDYYCPDCKGKFTGKLSASQTYKSKIKSIENSQKPVLPEKLPVLCNGMEGIYIPKLHLVMCKCGLCGSRKQTVTEWERHAGCRAKKWKYSVKVESTKQPLIKWITEHNSQAGIFRQLDQKQVLSFLQETYEPVYAKWTTERCAICRWVEDWEDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRVCETPGVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVLFQNHEAMEPASGILKIPPDSFLKTCVICKQSHGSCTSCCKCATYFHVMCASRMGYSMELHSTEKNGTQITKTLIYCAVHRVPNPDSVLVVHTPQGTFSPRTSLQNHKGCFRGSRTASSQNIELLESSTSESYEVEPLSAARCRVYKRSSYKKDDGPILYLLGGPNIHSLGAITQLNSNKDAEIFSSFKERLRHLQKTENHRVCFGKSGIHGWGLFARRDLQEGEMVIEYRGEQVRRSVADLREAKYRSEGKDCYLFKISEEVVIDATDKGNMARLINHSCMPNCYARIMSLGDQESRIVLIAKTNVSAGEELTYDYLFDPDERDELKVPCHCKAPRCRKFMN. | 1010 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca2g05568 | 1009 | Pfam | PHD-finger | 593 | 627 | - | - | |
Seca2g05568 | 1009 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 630 | 748 | IPR013083 | - | |
Seca2g05568 | 1009 | ProSiteProfiles | PWWP domain profile. | 214 | 283 | IPR000313 | - | |
Seca2g05568 | 1009 | CDD | PHD_ATX3_4_5_like | 580 | 626 | IPR042011 | - | |
Seca2g05568 | 1009 | SMART | PWWP_4 | 212 | 281 | IPR000313 | - | |
Seca2g05568 | 1009 | SUPERFAMILY | FYVE/PHD zinc finger | 579 | 643 | IPR011011 | - | |
Seca2g05568 | 1009 | SMART | PostSET_3 | 993 | 1009 | IPR003616 | - | |
Seca2g05568 | 1009 | CDD | PHD_TCF19_like | 397 | 447 | - | - | |
Seca2g05568 | 1009 | FunFam | Histone-lysine N-methyltransferase | 841 | 1009 | - | - | |
Seca2g05568 | 1009 | FunFam | Histone-lysine N-methyltransferase | 630 | 749 | - | - | |
Seca2g05568 | 1009 | SUPERFAMILY | FYVE/PHD zinc finger | 394 | 452 | IPR011011 | - | |
Seca2g05568 | 1009 | CDD | PWWP_AtATX3-like | 215 | 324 | - | - | |
Seca2g05568 | 1009 | CDD | SET_SETD1-like | 856 | 1005 | - | - | |
Seca2g05568 | 1009 | SMART | PHD_3 | 580 | 627 | IPR001965 | - | |
Seca2g05568 | 1009 | SMART | PHD_3 | 691 | 747 | IPR001965 | - | |
Seca2g05568 | 1009 | SMART | PHD_3 | 396 | 448 | IPR001965 | - | |
Seca2g05568 | 1009 | Pfam | PWWP domain | 215 | 320 | IPR000313 | - | |
Seca2g05568 | 1009 | SUPERFAMILY | Tudor/PWWP/MBT | 210 | 323 | - | - | |
Seca2g05568 | 1009 | ProSiteProfiles | SET domain profile. | 867 | 984 | IPR001214 | GO:0005515 | |
Seca2g05568 | 1009 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 632 | 747 | IPR034732 | - | |
Seca2g05568 | 1009 | ProSiteProfiles | Zinc finger PHD-type profile. | 578 | 629 | IPR019787 | - | |
Seca2g05568 | 1009 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 573 | 629 | IPR013083 | - | |
Seca2g05568 | 1009 | Pfam | PHD-zinc-finger like domain | 634 | 746 | - | - | |
Seca2g05568 | 1009 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 3 | 1009 | IPR025780 | - | |
Seca2g05568 | 1009 | PANTHER | PHD FINGER PROTEINS | 75 | 429 | - | - | |
Seca2g05568 | 1009 | ProSiteProfiles | Zinc finger PHD-type profile. | 394 | 450 | IPR019787 | - | |
Seca2g05568 | 1009 | SUPERFAMILY | SET domain | 859 | 1006 | IPR046341 | - | |
Seca2g05568 | 1009 | ProSiteProfiles | Post-SET domain profile. | 993 | 1009 | IPR003616 | - | |
Seca2g05568 | 1009 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 388 | 452 | IPR013083 | - | |
Seca2g05568 | 1009 | SMART | set_7 | 867 | 990 | IPR001214 | GO:0005515 | |
Seca2g05568 | 1009 | Pfam | PHD-finger | 396 | 449 | IPR019787 | - | |
Seca2g05568 | 1009 | ProSitePatterns | Zinc finger PHD-type signature. | 581 | 626 | IPR019786 | - | |
Seca2g05568 | 1009 | Gene3D | SET domain | 785 | 1009 | IPR046341 | - | |
Seca2g05568 | 1009 | Gene3D | - | 207 | 324 | - | - | |
Seca2g05568 | 1009 | Pfam | SET domain | 878 | 983 | IPR001214 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca2g05568 | Seca-Chr2 | 142001303 | 142009930 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca2g05568 | 581 | 733 | C2H2 Transcription Factor Family | AT3G14740 | 34.969 | 2.70e-19 | 89.0 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Seca2g05568 | zf-HC5HC2H_2 | 5.2e-28 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca2g05568 | - | - | lja:Lj1g3v5034780.1 | 1514.59 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca2g05568 | 2 | 142001303 | 142009930 | Seca2g05568 | 2 | 142001303 | 142009930 | ECH |