Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05568 ATGATAATTAAGCGGACTATGAAAGCTGAAATGCTGAACGTGAAGCGTTGTAAGCTAGAAGAAGACGAGGACTATGAGTATTCGGCGATTCAGAAGAAACAGAGGGTGAACGGGTTTGGTTCTGTTGCTGACGGGTATTCTGGGTCAGGGTCCAGTGAAGGATCAAATTGTGGTGGTGAGGTCCACTTCAATTCAAATTCTATGGAGTTGAATGGTGCAAATATAAAAGCACCTCCATTATTGCGGTCATCGAGAGGTCGCGTTCAGATGCTTCCAGCCAGGTTCAGCGACTCGGTTCTTGATATATGGAAGAATAATGGACGAATCAAAATAGAAGACAAACGCTCCGGCTTTGTAGAAGATGATAATAGTTTACGAGATATTGGACTGGGATTTGAGAAACAGGGAAAGAGAAATAAATGTAGCTCAAAAAATTCTCCTTGTTTTCCTGATTCTGCTGAAATAGAATTGGGTGGATTAGGTTTCAACGATTTTGACTACGAGAAGCATGCCAACTCGTTTAAGAGCATTAAAACGACAGTCAATGGGGGTCGTTCGTTGTTGGTTAAAACAGAGAGTAATGGCATTGGTGGAAATGCCAAAAGAAGGAAAGACATTTATAAACTAGAGGATTTTGCTTTGGGTGATATAGTTTGGGCAAAATGTGGGAAACAATATCCGGCGTGGCCTGCTGTGGTGATTAATCCCATCTTACAAGCTCCCAAGTCTGTTCTCAACTGTTGTGTTCCTGGTGCAATTTGCGTTATGTTTTTTGGTTATTCAAAAAACGGAAAGCAAAGGGACTATGCGTGGGCGAAGCAGGGGATGATATTCCCATTCTTGGAATTCATGGACAGGTGTGTATGTGAACAACATATGGAGAATATATTCCAGGGGCAGACCCGATTGTACAAGAGCAAACTGAGTGACTTTCACATGGCAATGGAGGAGGCAATGCTGGCAGAAGATGGCATTTTGGACACACACTTGGGAACTGAGCAAATTATGGATTGTGCAGCAGGTTCCTGTGTTGATCAGGAATATAGCCACCAAAACCAGGATACAATATCTTGTGCTGGCTGTGGTCTGATGTTGCCATGCAAAACCAAGAAGAAGATTAAGGATTCAAGCTGTGCTCCTCAGCATTATTGTAAACCCTGTGCAAAGTTACTAAAATCAAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGAATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAACAAACTTTTCAAGGATCTGGAAAATATAGATTACTACTGCCCAGATTGCAAGGGAAAGTTTACCGGTAAATTATCGGCATCACAAACATACAAATCAAAAATTAAATCAATAGAGAATAGCCAAAAGCCTGTGTTACCTGAAAAGCTACCGGTGTTGTGCAATGGCATGGAAGGAATTTATATTCCAAAGCTTCATTTAGTCATGTGCAAGTGTGGCTTGTGTGGTTCAAGGAAGCAGACAGTGACTGAATGGGAACGGCATGCAGGTTGCAGAGCCAAAAAATGGAAATATAGTGTGAAAGTAGAAAGCACAAAGCAACCACTAATAAAATGGATCACAGAACACAATTCCCAAGCTGGAATTTTTCGACAATTAGATCAGAAACAGGTGCTTTCCTTTTTGCAAGAGACGTATGAGCCAGTTTATGCAAAATGGACAACAGAAAGATGTGCGATTTGTAGATGGGTTGAAGATTGGGAAGATAACAAAATTATTATCTGTAACAGGTGCCAAATTGCAGTCCACCAAGAGTGCTATGGGGCAAAGAATGTTCAAGATTTTACTTCCTGGGTTTGTAGAGTCTGTGAAACTCCTGGTGTTGAAAGAGAGTGTTGCCTCTGTCCAGTAAAAGGTGGTGCACTGAAGCCAACTGATGTGGAGATGTTGTGGGTTCACGTAACATGCGCTTGGTTTCGGCCTGAAGTTCTTTTTCAAAACCATGAGGCAATGGAACCTGCTTCTGGAATCCTTAAGATTCCTCCTGATTCCTTTTTGAAGACATGCGTGATCTGTAAACAAAGCCATGGTTCCTGTACAAGTTGTTGCAAGTGTGCGACATATTTTCATGTGATGTGCGCCTCGAGAATGGGATATAGCATGGAATTGCATTCTACAGAGAAGAATGGGACTCAAATAACAAAGACACTGATATATTGTGCAGTTCACAGGGTCCCAAATCCAGATTCAGTACTGGTTGTGCATACACCCCAAGGGACATTCTCTCCAAGAACCTCGCTTCAAAATCACAAGGGATGCTTTAGAGGATCAAGGACGGCTTCGTCACAGAATATAGAACTACTTGAATCTTCAACCTCTGAAAGTTATGAGGTTGAGCCACTATCTGCTGCCAGGTGTCGTGTGTACAAAAGGTCTTCCTATAAGAAAGATGATGGACCAATACTTTACTTGCTTGGGGGGCCAAACATTCATTCTTTAGGTGCAATAACTCAATTGAACAGCAACAAGGATGCTGAAATATTTTCTTCTTTCAAGGAACGTCTTCGCCATTTACAAAAAACAGAAAATCATAGAGTTTGCTTTGGAAAGTCAGGTATTCATGGATGGGGCCTCTTTGCCCGTAGAGATTTGCAAGAAGGAGAAATGGTTATTGAGTATCGTGGTGAGCAGGTAAGGCGTAGTGTTGCTGATCTGAGGGAAGCGAAATACCGTTCAGAAGGCAAAGATTGTTATCTGTTCAAGATTAGTGAAGAAGTGGTAATTGATGCAACGGATAAGGGCAATATGGCACGTTTAATAAACCATTCTTGCATGCCAAACTGCTATGCAAGGATTATGAGTTTAGGTGATCAGGAGAGCCGGATTGTTCTTATTGCCAAGACCAATGTCTCTGCTGGTGAAGAACTAACGTATGATTACTTGTTCGATCCAGATGAGCGGGATGAACTCAAGGTTCCCTGCCACTGCAAAGCTCCCAGATGTAGGAAATTTATGAATTAG 3030 0.4188 MIIKRTMKAEMLNVKRCKLEEDEDYEYSAIQKKQRVNGFGSVADGYSGSGSSEGSNCGGEVHFNSNSMELNGANIKAPPLLRSSRGRVQMLPARFSDSVLDIWKNNGRIKIEDKRSGFVEDDNSLRDIGLGFEKQGKRNKCSSKNSPCFPDSAEIELGGLGFNDFDYEKHANSFKSIKTTVNGGRSLLVKTESNGIGGNAKRRKDIYKLEDFALGDIVWAKCGKQYPAWPAVVINPILQAPKSVLNCCVPGAICVMFFGYSKNGKQRDYAWAKQGMIFPFLEFMDRCVCEQHMENIFQGQTRLYKSKLSDFHMAMEEAMLAEDGILDTHLGTEQIMDCAAGSCVDQEYSHQNQDTISCAGCGLMLPCKTKKKIKDSSCAPQHYCKPCAKLLKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISNKLFKDLENIDYYCPDCKGKFTGKLSASQTYKSKIKSIENSQKPVLPEKLPVLCNGMEGIYIPKLHLVMCKCGLCGSRKQTVTEWERHAGCRAKKWKYSVKVESTKQPLIKWITEHNSQAGIFRQLDQKQVLSFLQETYEPVYAKWTTERCAICRWVEDWEDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRVCETPGVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVLFQNHEAMEPASGILKIPPDSFLKTCVICKQSHGSCTSCCKCATYFHVMCASRMGYSMELHSTEKNGTQITKTLIYCAVHRVPNPDSVLVVHTPQGTFSPRTSLQNHKGCFRGSRTASSQNIELLESSTSESYEVEPLSAARCRVYKRSSYKKDDGPILYLLGGPNIHSLGAITQLNSNKDAEIFSSFKERLRHLQKTENHRVCFGKSGIHGWGLFARRDLQEGEMVIEYRGEQVRRSVADLREAKYRSEGKDCYLFKISEEVVIDATDKGNMARLINHSCMPNCYARIMSLGDQESRIVLIAKTNVSAGEELTYDYLFDPDERDELKVPCHCKAPRCRKFMN. 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05568 1009 Pfam PHD-finger 593 627 - -
Seca2g05568 1009 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 748 IPR013083 -
Seca2g05568 1009 ProSiteProfiles PWWP domain profile. 214 283 IPR000313 -
Seca2g05568 1009 CDD PHD_ATX3_4_5_like 580 626 IPR042011 -
Seca2g05568 1009 SMART PWWP_4 212 281 IPR000313 -
Seca2g05568 1009 SUPERFAMILY FYVE/PHD zinc finger 579 643 IPR011011 -
Seca2g05568 1009 SMART PostSET_3 993 1009 IPR003616 -
Seca2g05568 1009 CDD PHD_TCF19_like 397 447 - -
Seca2g05568 1009 FunFam Histone-lysine N-methyltransferase 841 1009 - -
Seca2g05568 1009 FunFam Histone-lysine N-methyltransferase 630 749 - -
Seca2g05568 1009 SUPERFAMILY FYVE/PHD zinc finger 394 452 IPR011011 -
Seca2g05568 1009 CDD PWWP_AtATX3-like 215 324 - -
Seca2g05568 1009 CDD SET_SETD1-like 856 1005 - -
Seca2g05568 1009 SMART PHD_3 580 627 IPR001965 -
Seca2g05568 1009 SMART PHD_3 691 747 IPR001965 -
Seca2g05568 1009 SMART PHD_3 396 448 IPR001965 -
Seca2g05568 1009 Pfam PWWP domain 215 320 IPR000313 -
Seca2g05568 1009 SUPERFAMILY Tudor/PWWP/MBT 210 323 - -
Seca2g05568 1009 ProSiteProfiles SET domain profile. 867 984 IPR001214 GO:0005515
Seca2g05568 1009 ProSiteProfiles Extended PHD (ePHD) domain profile. 632 747 IPR034732 -
Seca2g05568 1009 ProSiteProfiles Zinc finger PHD-type profile. 578 629 IPR019787 -
Seca2g05568 1009 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 573 629 IPR013083 -
Seca2g05568 1009 Pfam PHD-zinc-finger like domain 634 746 - -
Seca2g05568 1009 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1009 IPR025780 -
Seca2g05568 1009 PANTHER PHD FINGER PROTEINS 75 429 - -
Seca2g05568 1009 ProSiteProfiles Zinc finger PHD-type profile. 394 450 IPR019787 -
Seca2g05568 1009 SUPERFAMILY SET domain 859 1006 IPR046341 -
Seca2g05568 1009 ProSiteProfiles Post-SET domain profile. 993 1009 IPR003616 -
Seca2g05568 1009 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 452 IPR013083 -
Seca2g05568 1009 SMART set_7 867 990 IPR001214 GO:0005515
Seca2g05568 1009 Pfam PHD-finger 396 449 IPR019787 -
Seca2g05568 1009 ProSitePatterns Zinc finger PHD-type signature. 581 626 IPR019786 -
Seca2g05568 1009 Gene3D SET domain 785 1009 IPR046341 -
Seca2g05568 1009 Gene3D - 207 324 - -
Seca2g05568 1009 Pfam SET domain 878 983 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05568 Seca-Chr2 142001303 142009930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05568 581 733 C2H2 Transcription Factor Family AT3G14740 34.969 2.70e-19 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca2g05568 zf-HC5HC2H_2 5.2e-28 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05568 - - lja:Lj1g3v5034780.1 1514.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05568 2 142001303 142009930 Seca2g05568 2 142001303 142009930 ECH