Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05567 ATGAACACCTTGAAGTTTCTCTTTCACTTGTTCATCTTTTTCCCTGTCATATGTGCTTCCTCAGAAGATTGCCAATATTCATGGTGCAGCGACAATAACATCCTTATTCGTTTCCCCTTTCAACTAGAAGGTCAGCAACACCCTTACTGTGGCTATCCTGGTTTCAACTTAACTTGTACTAATGATAGCAAAACAGTTCTAAAACTTCCTTATAGCGGAGAATTCTATGTCCGCAACATCAACTATCTCAGACAACAGATACAAGTCTATGACCCTGATGATTGCCTTCCAAAACGTCTTCTAAGCCTCAATCTCTCAGCTTCTCCCTTCAATGCCATTTATCTCAGTAACTACACATTCTTAAGCTGCCCAACTCGGAACACAGAGTCACAATTCATTCCTGTTGACTGTCTTAGCAATTCTACACATTTTGTATCAGCTATTCCTTCAGTGAACTTGACCAATTCATTGCCTGAGTATTGCCATGTTATCAGAAACCTCTCAGTTCCAGTTGCAAGGTCAGGGCGATATGAGGAAATTTTCAGAGATCAACTTAGTGAAGATCTTCGATTAACATGGTATTCACCTGACTGTAGTTATTGCGAATTACAAGATGGCAGGTGCGGATTTGAGAGCAGAAACAGTGATCAAGTTCATTGTTTCTCTGATTACCAAACGGGTCGTTCACAAGATGGTCTTCGGGTTTTCAGAATCATCTTATTATCCATTGCGGGACCAGCTGTGATGTGTGCCATTGGGATGGCATGCTTCACGTGCTTCAAGCACAGAAGTGGCATTAGTAGTGCACCCAGAATTGCTGCTGCACAGAGGTTTGCACCAACAGCAATATTAATATCACCACAACCAGCCATTACTACGGTGGGTCTGGATGAGTCTACAATTGAGTCTTTTCAGAAGCTTGTACTTGGGGAGAGCCGAAGACTGCCGGGACCCAATGATGGATTTTGTTCAATATGCCGGTCAGAGTACAGCAGCAAGGAGACAATAAGATGCATTCCTGAGTGCTCACACTGTTTCCATGCTCACTGCATAGATGAATGGCTTCGCATGAACAGTACATGCCCACTTTGCCGCAACTCCCCCTCCCCTTCTCCTCTTGTTATGTCCAGTAATCCTTGA 1140 0.4342 MNTLKFLFHLFIFFPVICASSEDCQYSWCSDNNILIRFPFQLEGQQHPYCGYPGFNLTCTNDSKTVLKLPYSGEFYVRNINYLRQQIQVYDPDDCLPKRLLSLNLSASPFNAIYLSNYTFLSCPTRNTESQFIPVDCLSNSTHFVSAIPSVNLTNSLPEYCHVIRNLSVPVARSGRYEEIFRDQLSEDLRLTWYSPDCSYCELQDGRCGFESRNSDQVHCFSDYQTGRSQDGLRVFRIILLSIAGPAVMCAIGMACFTCFKHRSGISSAPRIAAAQRFAPTAILISPQPAITTVGLDESTIESFQKLVLGESRRLPGPNDGFCSICRSEYSSKETIRCIPECSHCFHAHCIDEWLRMNSTCPLCRNSPSPSPLVMSSNP. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05567 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 370 IPR013083 -
Seca2g05567 379 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 369 IPR046948 -
Seca2g05567 379 Pfam Wall-associated receptor kinase galacturonan-binding 24 91 IPR025287 GO:0030247
Seca2g05567 379 SUPERFAMILY RING/U-box 316 368 - -
Seca2g05567 379 CDD RING-H2_EL5-like 323 365 - -
Seca2g05567 379 Pfam Wall-associated receptor kinase C-terminal 156 222 IPR032872 -
Seca2g05567 379 SMART ring_2 323 364 IPR001841 -
Seca2g05567 379 ProSiteProfiles Zinc finger RING-type profile. 323 365 IPR001841 -
Seca2g05567 379 Pfam Ring finger domain 323 365 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05567 Seca-Chr2 141998690 142000356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05567 22 371 C3H Transcription Factor Family AT2G46495 43.785 2.25e-95 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05567 - - gmx:100799895 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05567 2 141998690 142000356 Seca2g05567 2 141998690 142000356 ECH
Seca2g05567 2 141998690 142000356 Seca2g05567 2 141998690 142000356 PCT