Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05566 ATGGATTACGACAACAGCAACAGCAACAAGATGTTCAACCTGTTCGTGAAGCACTTGGACGGGAAAACCCTAACCCTATTATTCCCATCTCCGATCCTTTACGCCAGTTCCATTAAGGATCGCCTTTTCGAGCTCACCGGAATCCCCACACAACACCAGCGCCTGGTCACCGGTTGCCGCCACCTGAACGACGAAAAATCGGTGATATGTTGCTCGCCAGAAGAAGGGAACATGTTCCCGTCGGTGCGGCTGCTACTGCGGCTGAAAGGTGGGAAGGGAGGGTTCGGGTCGCTTCTGCGTGGGGCGGCGACGAAGGCTGGGCAGAAGAAGACGAACAATTTCGACGCTTGCAGGGATATGAGTGGGCGAAGGCTGAGGCACGTGAACGCTGAGAAGAGATTGGAGGAGTGGAAGGCAGGGGAAGAGGAGAGAAGGCTTGAGAAGGTTGCAGAGGAGTTTCTGAAGAAGCAGATGAAGAAGGGTAAGAAGGGTAATGGTGATGGTGAGGCACACAAGTACGTCGCTAAATATAGGGAGGAGTCTGAACGCTGCGTTGCAGAGGTTGCGTTGTCTGTTAAGGAGGCTTTGTTGTCTAAGCGCAAGTCTTCACAATCAGAAGCTTCCCCTCCTCGTGATGCCAAGAAGTTGAAGATATGGATGGGGAAGAGGAAATTGAATGAAAGTGATAGTGATGATTCTGATGATGATGATGAAGGGGAAACTGAGAAATCTGTGTTGTTAAATAGTCAGAATGAGTCAGGCTCGAATAAGGGTGAAGACAGTTCAGGTTCTGTTACTGGTCAGAAGCAGGATGGAGGCTCTTCTGGTGCCGGCTCATGTGAAAGTGGATCTGAAGAAGAGAAAGAAACTGTTGTAGATGAAGGCAAAGTGGAATCTTTTGGATCCCAGAGTAGTGAACCTATTCAGCCCAAGCTGAGTGTTGCTACTGAATCTGTGATGATGGAAGCTAATGTTATGCCTTGTTCAGAGTCAATAGTTTCTGAAATTAATGCTGAAGATAATGGATCTCAGGATTGCAACGGAGCTGTAGCTGACAAGTTTGATGGCACTGTTAGTCAAACCTCAAGTGTTCTGAGCACTGAAACACTGGCCGGTGCAGGCAAATCTAATGACATGGAAATTGATGCATCTCTTGAGCATAAAGCAGCAGTCAATGAAGAAAGCTTGCCAAGCACCAGTGTTCCAGCATTGGATGAGCCTCTGAATTTTGATGCTTTTAATTCAGCTGCAGAACTTGAGGTTCTTGGCTTGGAAAAGTTGAAGTCTGAACTGCAGTCACGTGGGTTAAAATGTGGAGGTACTTTGCAGGAGCGGGCTGCCAGGCTATTTCTTTTAAAATCGACACCCCTGGATAAACTCCCAAAGAAGCTGCTTGCGAAGAAGTGA 1407 0.479 MDYDNSNSNKMFNLFVKHLDGKTLTLLFPSPILYASSIKDRLFELTGIPTQHQRLVTGCRHLNDEKSVICCSPEEGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAGEEERRLEKVAEEFLKKQMKKGKKGNGDGEAHKYVAKYREESERCVAEVALSVKEALLSKRKSSQSEASPPRDAKKLKIWMGKRKLNESDSDDSDDDDEGETEKSVLLNSQNESGSNKGEDSSGSVTGQKQDGGSSGAGSCESGSEEEKETVVDEGKVESFGSQSSEPIQPKLSVATESVMMEANVMPCSESIVSEINAEDNGSQDCNGAVADKFDGTVSQTSSVLSTETLAGAGKSNDMEIDASLEHKAAVNEESLPSTSVPALDEPLNFDAFNSAAELEVLGLEKLKSELQSRGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK. 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05566 468 Pfam Replication stress response SDE2 C-terminal 399 467 IPR025086 -
Seca2g05566 468 MobiDBLite consensus disorder prediction 244 281 - -
Seca2g05566 468 MobiDBLite consensus disorder prediction 205 229 - -
Seca2g05566 468 MobiDBLite consensus disorder prediction 198 313 - -
Seca2g05566 468 MobiDBLite consensus disorder prediction 297 312 - -
Seca2g05566 468 ProSiteProfiles Ubiquitin domain profile. 12 68 IPR000626 GO:0005515
Seca2g05566 468 PANTHER SPLICING FACTOR SF3A-RELATED 13 467 - -
Seca2g05566 468 SUPERFAMILY Ubiquitin-like 7 77 IPR029071 -
Seca2g05566 468 Gene3D - 7 91 - -
Seca2g05566 468 CDD Ubl_ubiquitin_like 14 79 - -
Seca2g05566 468 Pfam Silencing defective 2 N-terminal ubiquitin domain 13 157 IPR024974 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05566 Seca-Chr2 141996154 141998393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05566 394 467 C2H2 Transcription Factor Family AT5G06160 45.946 2.39e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05566 K25059 - gmx:100799364 589.341