Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05564 ATGAATGCAAAGGGACATAAGTTTGTGAGGTTTGAGGACTTCAAATCCGAGTCATCTTTTAGTATAGAGCAGGAAGATTCTGTAAACAATGGATATCACACAAGAAAATTTAGACCAAGTGTAAATGCTATTTTGAAGAGTATCGGAAGAAGACTAGAGAGTGGGTCAGAGAAGATAAAGAACTTGAGAAGACCTTCAGCTGTCCACCCTGTAAGCAATGGACAAACAAAAAAGCCGGCTTCTAGGCGCAAAATTCATGATCCACAGGGGCCAATGCTTCAGAGATGGAACAAAATCTTTGTAATCACTTGTGTGATGGCAGTCTCTGTGGACCCATTGTTCTTTTACATTCCAGTGATCCATGGGAAAGAGAAATGCCTTGATTTGAATGGAACATTGCAGATTACTACTAGTGTTCTTCGCACTTTCTTTGATCTTTTCTACATTCTCCGCATAATATTTCAGTTTCAAACAGGGTTTATTGCCCCTTCTTCTCGTGTTTTTGGAAGGGGTGATCTGATTGATGATCCAGTGGCAATAGTGAAAAGATACTTAAGCTCTCACTTCATCATTGACATTCTATCAATTCTTCCACTCCCACAGGTGGTTGTTTTAGCTATAATTCCAAACATCAAAGATTCAGTTCCATTTGTAGCAAAGGATTTGTTGAAGTATATAGTACTAATCCAGTATGTGCCAAGGCTGCTGCGGATCTATCCACTATTCAAAGAAGTAACTAGAACTTCTGGCATATTGACAGAGACAGCATGGGCTGGGGCTGTTTATAATCTTTTTCTCTATATGCTAGCAAGTCATGTGGTTGGAGCTAACTGGTATCTGCTTTCAATAGAATCAGAGGTGCGGTGCTGGCGCCGAGAGATGAATAAAGCTTCGCTCTTTCATGAATCTTACTTGGGCTGTGGAACCCGGGATCCAGCTGTCTTTCCACTTCTCAATAGCACTTGCTCTTTCGTTGACCCTGATCAAATCAAGGATACAAACACCTTCAATTTTGGAATATTTTTCGATGCTCTAGATTCAGGTGTGGTAGATTCAACAACTGATTTTCCTCAGAAATTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCACTTGGACAAAACCTCAAGACAAGTACTTATATCGTGGAGATAGCCTTTGCAATCTTCATTGCCATCTTTGGATTGGTTTTATTCTCATTACTTATTGGAAACATGCAGACATTTTTACAGAAATACCTGGAATCTACAACTGTTAGGGTGGAAGAGATGAGAGTGAAGAGGCGGGATGCTGAACGGTGGATGTCCCACCGTATGCTACCTGAGAACTTGAAGAAAAGAATTAGAAGGTATGAACAGTACAAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGGCATTAATTCGTAACCTCCCTAAAGATCTCAGAAGGGACATAAAGCGCCATCTTTGCTTTACTTTAGTTAAAAAGGTGCCAATGTTTGAGAAAATGGATGAGCAGTTGTTGGATGCAATGTGTGATAGGCTGAAGCCAGTCCTTTATACAGAGAAGAGCTGCATTGTTCGTGAAGAAGATCCAGTTGATGAGATGCTTTTCATTATGCGTGGAAAAGTTTCTACTATGACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTTATTTCTCGAGGCTGGTGACTTCTGTGGAGAGGAGCTTCTAACATGGGCTTTGGATCCCAACTCCTCCTCAAATCTACCCGTTTCAACTAGAACAGTAGAAACTATATCAGAAGTTGAAGCCTTTGCTCTTATGGCTGATGACTTGAAGTTTGTTGCATCCCAATTTCGACGTCTCATTAACAGCAAACAGCTCCAGCAGACTTTCAGGTTCTATTCCCCACAATGGAAGACATGGGCTGCCTGTTTCATACAAGCAGCTTGGCGTCGATACTGGAAAAAGAAGAATGATAGGTCATTTCTTGAAGCAGAAGAGAAGCTACAAGATGTTCTTGCAAATGAGGATGGCTCCACCCTAAGCCTTGGTGCAACCATATATGCATCAAGGTTTGCTGCCAATGCATTACGAGCCTTGAGAGAAAATAACAGACACAACAGAATGCCTCAGAGACTACTACCTCTGTTACCTCCAAAGCCAGCTGAGCCAGATTTCACTGCTCAGACAAACTAG 2175 0.4147 MNAKGHKFVRFEDFKSESSFSIEQEDSVNNGYHTRKFRPSVNAILKSIGRRLESGSEKIKNLRRPSAVHPVSNGQTKKPASRRKIHDPQGPMLQRWNKIFVITCVMAVSVDPLFFYIPVIHGKEKCLDLNGTLQITTSVLRTFFDLFYILRIIFQFQTGFIAPSSRVFGRGDLIDDPVAIVKRYLSSHFIIDILSILPLPQVVVLAIIPNIKDSVPFVAKDLLKYIVLIQYVPRLLRIYPLFKEVTRTSGILTETAWAGAVYNLFLYMLASHVVGANWYLLSIESEVRCWRREMNKASLFHESYLGCGTRDPAVFPLLNSTCSFVDPDQIKDTNTFNFGIFFDALDSGVVDSTTDFPQKFFYCFWWGLRNLSSLGQNLKTSTYIVEIAFAIFIAIFGLVLFSLLIGNMQTFLQKYLESTTVRVEEMRVKRRDAERWMSHRMLPENLKKRIRRYEQYKWQENRGVEEEALIRNLPKDLRRDIKRHLCFTLVKKVPMFEKMDEQLLDAMCDRLKPVLYTEKSCIVREEDPVDEMLFIMRGKVSTMTTNGGRTGFFNSLFLEAGDFCGEELLTWALDPNSSSNLPVSTRTVETISEVEAFALMADDLKFVASQFRRLINSKQLQQTFRFYSPQWKTWAACFIQAAWRRYWKKKNDRSFLEAEEKLQDVLANEDGSTLSLGATIYASRFAANALRALRENNRHNRMPQRLLPLLPPKPAEPDFTAQTN. 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05564 724 FunFam Cyclic nucleotide-gated ion channel 1 422 486 - -
Seca2g05564 724 Gene3D - 98 416 - -
Seca2g05564 724 SMART cnmp_10 495 626 IPR000595 -
Seca2g05564 724 MobiDBLite consensus disorder prediction 63 87 - -
Seca2g05564 724 FunFam Cyclic nucleotide-gated ion channel 1 493 611 - -
Seca2g05564 724 Gene3D Jelly Rolls 493 613 IPR014710 -
Seca2g05564 724 MobiDBLite consensus disorder prediction 701 724 - -
Seca2g05564 724 Gene3D Helix hairpin bin 422 486 - -
Seca2g05564 724 Pfam Ion transport protein 95 414 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca2g05564 724 CDD CAP_ED 495 627 IPR000595 -
Seca2g05564 724 SUPERFAMILY cAMP-binding domain-like 424 612 IPR018490 -
Seca2g05564 724 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 59 719 - -
Seca2g05564 724 ProSiteProfiles cAMP/cGMP binding motif profile. 495 579 IPR000595 -
Seca2g05564 724 SUPERFAMILY Voltage-gated potassium channels 87 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05564 Seca-Chr2 141980588 141986022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05564 1 721 Ion Channels AT5G53130 65.565 0.0 934
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05564 K05391 - gmx:100797784 1176.39