Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05556 ATGGAAGAGACCACCAAGAGGAAACATGTTACTCTTATCAATGAACTAATCCAAGGAAAGGAGCTAGTAAATCAGCTCAGTAGCCATCTTGTCTCTTCTCCATCATCCCATCAAACCAATGAATTCTTGATTGAGCAAATACTTTCATCCTACGAGAAAGCAATATCCATGCTCAACTCTGTGTCTAATGTGGGAGTGGGTGGGATTATGACCCCCAATGGCAACATCATGGATTCCCATTGCTCTGATGGGAGCCCCAGAAGTGAGGTCATGGACCTTGAATTTGAGCACAAAGCTGTCTTCAAGAAAAGAAAGACCATGCCTAGATGGACAGAGCAAGTGAAGATTTGCTCAAAAACAGGACTTGAAGGATCATTGGATGATGGATATAGCTGGAGAAAATATGGGCAAAAGGATATTCTTGGAGCTAAGTTTCCCAGAGGATATTACAGATGCACACATAGAAATGTACAAGGATGTCTGGCAACAAAGCAAGTTCAAAGGTCAGATGAAGACCCAACAATAATTGAGGTGACCTACAGAGGAAGACACACATGCAAGCAAACTAAGAATTTAAACAAGGAGTTTCCATCAAAAATGAAGATTTGTTTAGGGGAAAATCAACTCCACAATGATCAAAAGAATCAACTACTATTGCAGGAGAAAATGGAACAAACCCCAGAGACAATTTTCCCATTTAAAGCAGAGCTTGAAGCCAAAACAGAGGACTTGGAAACCAAGGAGGATATCTTCCCTTGGCTTTGCTTTCAATCTCCATCAATTGGATCAAAAAACGAGGACAATAACATATTATCAGAGACCATGATGGAAAACCATTTCATGGAAAGCTTTTCCCCTGCATTCATATCTTCAGAATCAAACCTTCTCTGTTTGTCAGCATACCACTTGGGCAGCACTAGACTAAGCCAAAACGTACAACCCTCAGAATCTGATATCACTGAGATAATTGCAGCCCCAACTTCAGTCACCAATTCCCCAATTCTGGATTTGGATATCTTACTACATAAAGGTGATTTCGACACGGATTTCCCTTTCAACATCCCTGAATATTTCTCTTCATGA 1083 0.4063 MEETTKRKHVTLINELIQGKELVNQLSSHLVSSPSSHQTNEFLIEQILSSYEKAISMLNSVSNVGVGGIMTPNGNIMDSHCSDGSPRSEVMDLEFEHKAVFKKRKTMPRWTEQVKICSKTGLEGSLDDGYSWRKYGQKDILGAKFPRGYYRCTHRNVQGCLATKQVQRSDEDPTIIEVTYRGRHTCKQTKNLNKEFPSKMKICLGENQLHNDQKNQLLLQEKMEQTPETIFPFKAELEAKTEDLETKEDIFPWLCFQSPSIGSKNEDNNILSETMMENHFMESFSPAFISSESNLLCLSAYHLGSTRLSQNVQPSESDITEIIAAPTSVTNSPILDLDILLHKGDFDTDFPFNIPEYFSS. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05556 360 Gene3D WRKY domain 112 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g05556 360 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 10 300 IPR044810 GO:0003700
Seca2g05556 360 Pfam WRKY DNA -binding domain 127 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g05556 360 ProSiteProfiles WRKY domain profile. 121 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g05556 360 FunFam WRKY transcription factor 53 112 189 - -
Seca2g05556 360 SMART WRKY_cls 126 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g05556 360 SUPERFAMILY WRKY DNA-binding domain 125 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05556 Seca-Chr2 141929007 141931910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05556 11 251 WRKY Transcription Factor Family AT4G23810 40.221 3.88e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca2g05556 WRKY 3e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05556 - - gmx:100790050 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05556 2 141929007 141931910 Seca2g05556 2 141929007 141931910 ECH
Seca12g06576 12 157883878 157885193 Seca2g05556 2 141929007 141931910 ECH
Seca2g05556 2 141929007 141931910 Seca2g05556 2 141929007 141931910 PCT