Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05554 ATGAGTAATTTATCTGAACATAAGGAAGATGAGAATGATGGAAATGAAAATGAGGGAAGCGAAAATGAATTGAGTGAACACATTTGTATTGATAACTTCCAGGACATTGTTAAAAACAATCTTGTATCTAAAAGTCCTGAGCAGATTATGTTGAAGTATGATTTTGTGAGTCTTGAAATGGCTTATGTGTTTTATAGTTGGTATGGGAGGTTTAACGGGTTTGCTGTTCGAAAAAGCAAGATAAGTTATAATTGTCGGAAGGAAATTGTTGGTCGTGACTTTTTGTGCAACAAAGAAGGCAAACGGAGAAAACGAAATGATGATAGTGATTCAGAAGAAGATCCCGAACGAGAGCCTAAACCACAGACTAGGTGTGAGTGTAAAGCTAAATTTCGTGTGCATGTTGATTTTAATTCACGTTGGTGGTATGTGACGTGTTTTGACAATAGACATAATCATGAGCTGCTGGATGAAAAGTTTTTTGGTATGCTACCAGCTCATAGAAATATGAGCGAAGGGGATATTATAGAGATGAATAATATGTTAAAGGATGGTATAGGGGCTCCACAAATTTATAATTCATTTGCAAGCCAAGCAGGAGGGTATGAAAAGGTTGGTTTCTGGAAGAAAGACATGTACAACGAAATTGATAAACAAAGGAAGTTACGAAATGGTGATACCATGGCTGCGTTAGAATATCTAGGAGGTTTAGGGAAGAAGGATAAGAAATTGTTTTGTCGGTACACAATTGATGAAGAAGGAAGGCTTGAGCACTTATTCTGGTCTGATGGATATAGTCAGATGGACTATAGCATATTTGGTGATGTAGTAGCATTTGATGCTACCTATGGTAAGAACAAGTATCGTTGCCCTCTTGTAATTTTTTCTGGTCTTAATCATCATAGTAAGTCAATTGTGTTTGCCACTGCTATCATTGCAAATGAAACAGAAGCAACCTATGTATGGCTTCTTGAGAAATTTCTAGATGCAATGAAAGGTAGTGCACCTACATCGGTGATCACAGATGGTGATCTTGCAATGAAGAATGCTATTAAAAGGGTTCTTCCTAAGACTCACCACAGATTGTGTGCTTGGCACCTGATACGTAATGCCACTTCAAACATTGCAAATCCCACTTTCACTCATCTGTTCAAGAAATGCATGCTAGGTGATATTGAAATTCGTGACTTTCAACGAAAGTGGAGTGATATGGTGAAAAAGTGTAATGTGGAGGAGCATCGATGGGTCATTGAGATGTATGAACGGAGGAAAATGTGGGCCACATGCTACATTCGGGGGAACTTTTTTGCAGGATTTAGGATCACATCACGGTGCGAGGGTCTACATTCTGAAGTTGGGAAGTTCATTAATTCAAGATTGAGTTTGTGTGAGTTTTTGCAACATTACTATTGCTGTTTGACTCACATGCGTTACAAGGAAGTGCAAGATGACTTCAAATCAGTGCATGGTGAGCCTGTTGTGCGTACTAGTTTATCTTCACTTGAGAAGTCTGCTAGCAAAGTTTATACCAGGGAAGTGTTTCGTCTTTTCCGTTCTGTGTTAGAGAGGGCAGCCCATGTGAAAGTTGTTCGGTGGAAAAAAAAGTTCCCATGCTTCATTTACACTGTTTCAAAGTATAGAAAAGTAGGGAGGGAGTGGAATGTGACATTCTACCCTGCTGAAAGTGTTTACAAATGTTCTTGTATGAGAATGGAATCAATTGGGCTTCCATGTGACCATATAATTGGGGTGTTGGTTTACCAAGATATTTCAGAATTACCTAGAGCCTTAGTACTTGATCGATGGTCAAAGGATGCAAAGTTGGGACTTCATGGTATGAATGGTAATGGATTTAATTTCTGTGACCCTCAATTGACAGCTAGATATTGGGCTTTGATGCACAGGTTTAGGGATGTGGCACGTGAAGCTTATGAAAATTTGGAAGATTACCATGATGCAGATGAGAATGCCATTAGTTTCCTTGCCCAGCTGAAAGAAAAGAAGGCAAGGAGGAGTGGTGGAGATGCAACTGTCGTGGTTAATGAAAATAATAATGTGGGGGATCCTTTACGGGCTAGAACAAAAGGAGCAGGTGGTGGAAGGTCAACACAAGCAGGAACAAGAAGGAGGCGTCCTCATCATTGCCGTAAATGTAAAGTTGCAGGGCACAATATTAATACTTGCCCTTTACTGCGAACATCAAGTTCCCAACCAGTACATGTAACAAGAGGTGCTTCTATAGATAGTGATAATGCAAAAGAAGTCATAGTAAGTATGCTTGATTACTTTACACCCTTTGATTATTTTAACATGTAA 2316 0.3921 MSNLSEHKEDENDGNENEGSENELSEHICIDNFQDIVKNNLVSKSPEQIMLKYDFVSLEMAYVFYSWYGRFNGFAVRKSKISYNCRKEIVGRDFLCNKEGKRRKRNDDSDSEEDPEREPKPQTRCECKAKFRVHVDFNSRWWYVTCFDNRHNHELLDEKFFGMLPAHRNMSEGDIIEMNNMLKDGIGAPQIYNSFASQAGGYEKVGFWKKDMYNEIDKQRKLRNGDTMAALEYLGGLGKKDKKLFCRYTIDEEGRLEHLFWSDGYSQMDYSIFGDVVAFDATYGKNKYRCPLVIFSGLNHHSKSIVFATAIIANETEATYVWLLEKFLDAMKGSAPTSVITDGDLAMKNAIKRVLPKTHHRLCAWHLIRNATSNIANPTFTHLFKKCMLGDIEIRDFQRKWSDMVKKCNVEEHRWVIEMYERRKMWATCYIRGNFFAGFRITSRCEGLHSEVGKFINSRLSLCEFLQHYYCCLTHMRYKEVQDDFKSVHGEPVVRTSLSSLEKSASKVYTREVFRLFRSVLERAAHVKVVRWKKKFPCFIYTVSKYRKVGREWNVTFYPAESVYKCSCMRMESIGLPCDHIIGVLVYQDISELPRALVLDRWSKDAKLGLHGMNGNGFNFCDPQLTARYWALMHRFRDVAREAYENLEDYHDADENAISFLAQLKEKKARRSGGDATVVVNENNNVGDPLRARTKGAGGGRSTQAGTRRRRPHHCRKCKVAGHNINTCPLLRTSSSQPVHVTRGASIDSDNAKEVIVSMLDYFTPFDYFNM. 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05554 771 Pfam FAR1 DNA-binding domain 64 156 IPR004330 -
Seca2g05554 771 Pfam MULE transposase domain 276 370 IPR018289 -
Seca2g05554 771 MobiDBLite consensus disorder prediction 1 23 - -
Seca2g05554 771 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 52 655 IPR031052 GO:0006355
Seca2g05554 771 SMART 26again6 564 591 IPR006564 GO:0008270
Seca2g05554 771 ProSiteProfiles Zinc finger SWIM-type profile. 541 589 IPR007527 GO:0008270
Seca2g05554 771 MobiDBLite consensus disorder prediction 679 713 - -
Seca2g05554 771 MobiDBLite consensus disorder prediction 101 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05554 Seca-Chr2 141920757 141923072 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca2g05554 MULE 2.2e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05554 - - tpra:123913749 752.281