LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g05510	ATGAGTTGCTTTCCGTGTTTTACCTCTCGGACTAAGAAAACCAATAGCAGGAGGGAGCATGCAGGGGCTGCTGCTGCTGCACCACCACAAGAAAACATTGTAACCAGACCACCCGATATAAAGAAACAAAAGGCAGATGACCAAGTTGACACATCAAACATTCAAGCACAAAATTTCACTTTCCGTGAGCTAGCCATTGCAACAAAGAATTTCCGCCAAGAGTGTTTGATGGGTGAAGGTGGCTTTGGCAGAGTTTACAAGGGAACAATTCCTGCAACCGGACAGGTGGTAGCAGTGAAGCAACTCGACAGAAATGGGATGCAAGGTGGCAGCAAGGAATTTCTGGTTGAGGTTATGTCACTAAGTCTGTTGAACCATGAAAATCTGGTCAAACTCACTGGTTATTGTGCTGATGGGGATCAACGTCTTTTGGTGTTTGAATTCATGCCAGGGGGCTCTCTAGAAAGCCGTCTTCTTGGTACTCACCCTTTCTTCTTTCTGTTTTTACTTTTTGGAACAGAGCGGGGACCTGATGATCCTCTGTTAGATTGGTATAGCAGAATGAAAATAGCATCTAATGCTGCGAAAGGATTGTGGTACTTGCATGACAAGGCCAATCCCTCAATTATATACAGGGACTTGAAATCAGCAAATATCTTGCTGGATAAAGATCTTAATGCAAAACTATCTGATTATGGACTGGCCAAACTTGCTGGTAAAGATAAGGCCAACATTGTACCTACAAGAGTTATGGGTACTTATGGTTACAGTGCTCCAGAGTATGTAAGAACAGGTAACCTCACCTTGAAATCAGATGTCTACAGTTTTGGGGTTGTCTTGCTAGAGCTCATAACTGGACGACGAGCTGTTGACACCACAAGACCACCCGATGAGCAAAATCTAGTTTCATGGGCACAACCCATATTTAGGGACCCAAAAAGATATTCAGATATGGCAGATCCACAATTGGGAAAAAATTTCCCAGAAAAGGATCTCAATCAAGTTGTTGCAATTGCAGCAATGTGCTTACAGGAGGAAGCAGCAGCGCGTCCTTTGATGAGTGATGTTGTAACTGCTCTGAGTTTTCTTTCTACATCTCCTCCACCAGATGCTCCTGCCCCTCTCCCACCTGCCAACTCAGTCTCCCAGAAGAGTGCTGCTGATGAGAGCGGTAGTGAGAGTGGGAGTGAGAGTGAGAGTGAAAGTGAAGACAGCCATAGTTCTGATGAAGAGGATAGTAAAACTGCTCAAAATCATGTTGCAGCAGGTAGTGCAAAACACCAAGAAGGTGATGATGTCTCAGAAAATGAATGTGATTATTATGAGAATGAAAACCAGCAAGATTATAGTCCACAAGATGTTAGAGAAACCAAGGAGTTTTACTCCAAATCAAGCCGCAAAAGCAGCTCTAGTTCAGATTCAGAAAGTGGACACAAAAAAAACAGTAGGAAAAAGAGCAGCAAAAGAACTTCTGGGAAAGAATTAAGCCAGAAAAGCAGTAAGAAGAAGAGCAGTAAAAAAGCTTCTGTAAGAATATTAAGCCACAAGAAAAGCACAGGCATGGGATCAGAGGATGGAAGCCATTCATCCCAATCCCATAGAAATGTTTCCATAAGCCGTAATAGCAGCAGTGGGGAGTCACAGGATGGAGGAGGTGTTGTCCTAATCAGCAGTGAGAATGTTCACTTCGAGGAAGGGAGCAGCAGACATATGGATGTTCATCATTATGAACGTACCAGCATGGGATCCGAGGAGGGAAGTTATCACCATCACCATCATCGTTCCAGCAGCAGGGGATCAGATGAGTGA	1809	0.4389	MSCFPCFTSRTKKTNSRREHAGAAAAAPPQENIVTRPPDIKKQKADDQVDTSNIQAQNFTFRELAIATKNFRQECLMGEGGFGRVYKGTIPATGQVVAVKQLDRNGMQGGSKEFLVEVMSLSLLNHENLVKLTGYCADGDQRLLVFEFMPGGSLESRLLGTHPFFFLFLLFGTERGPDDPLLDWYSRMKIASNAAKGLWYLHDKANPSIIYRDLKSANILLDKDLNAKLSDYGLAKLAGKDKANIVPTRVMGTYGYSAPEYVRTGNLTLKSDVYSFGVVLLELITGRRAVDTTRPPDEQNLVSWAQPIFRDPKRYSDMADPQLGKNFPEKDLNQVVAIAAMCLQEEAAARPLMSDVVTALSFLSTSPPPDAPAPLPPANSVSQKSAADESGSESGSESESESEDSHSSDEEDSKTAQNHVAAGSAKHQEGDDVSENECDYYENENQQDYSPQDVRETKEFYSKSSRKSSSSSDSESGHKKNSRKKSSKRTSGKELSQKSSKKKSSKKASVRILSHKKSTGMGSEDGSHSSQSHRNVSISRNSSSGESQDGGGVVLISSENVHFEEGSSRHMDVHHYERTSMGSEEGSYHHHHHRSSSRGSDE.	603

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g05510	602	MobiDBLite	consensus disorder prediction	14	48	-	-
	Seca2g05510	602	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	209	221	IPR008271	GO:0004672\|GO:0006468
	Seca2g05510	602	MobiDBLite	consensus disorder prediction	378	393	-	-
	Seca2g05510	602	MobiDBLite	consensus disorder prediction	449	463	-	-
	Seca2g05510	602	Pfam	Protein kinase domain	73	357	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca2g05510	602	FunFam	probable serine/threonine-protein kinase RLCKVII	42	148	-	-
	Seca2g05510	602	Gene3D	Transferase(Phosphotransferase) domain 1	149	367	-	-
	Seca2g05510	602	MobiDBLite	consensus disorder prediction	367	602	-	-
	Seca2g05510	602	PANTHER	OS07G0668900 PROTEIN	3	368	-	-
	Seca2g05510	602	SMART	serkin_6	71	363	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca2g05510	602	ProSiteProfiles	Protein kinase domain profile.	71	363	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca2g05510	602	MobiDBLite	consensus disorder prediction	563	602	-	-
	Seca2g05510	602	Gene3D	Phosphorylase Kinase; domain 1	40	148	-	-
	Seca2g05510	602	MobiDBLite	consensus disorder prediction	399	416	-	-
	Seca2g05510	602	SUPERFAMILY	Protein kinase-like (PK-like)	57	390	IPR011009	-
	Seca2g05510	602	CDD	STKc_IRAK	77	360	-	-
	Seca2g05510	602	MobiDBLite	consensus disorder prediction	523	554	-	-
	Seca2g05510	602	FunFam	Serine/threonine-protein kinase PBS1	149	373	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g05510	Seca-Chr2	141580907	141584144	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g05510	1	417	Glycoside Hydrolase	AT3G07070	56.177	4.58e-156	452

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-1	Seca2g05510		Pkinase	1.6e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g05510	-		-	gmx:100807682	696.427