Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05495 ATGTTTAACCTATCTCGCCTGCTACCTTCCACTTCCAGCAAGTTTTATAATTTTTCTGCTTTTACAAGCGCTGTTATTGAATTGAACCCCACTCTGCTTCTATTGTCCAACTATGAACTTGCAGGGTATGCTTCGGATCGTGTATTTGCTCCTTATTCTGTTTACAAGGGCAAAGCTGCATTCTCATTGAGTCCTTTTCTTCCAACTTTCACTAAGTTGGATACTGGGGCTACTGTTGTTGAGAGACGCGGTTCTATAATGATGATTTTCATGCATGCCATTGGGGAGCGCAAATATGACTGGGAGAAGAGACAAAGATTTGCTCTCTCAGCAACTGAAGTTGGTTCTTTGATAACCATGGGCCCCCAAGATTCATGTGAATTCTTTCATGACCCCTCAATGTTATCAAGTAATGCTGGTCAAGTGAGGAAGAGCTTATCAATTAAACCTCATGCAAACAGCAATGGCTACTTTGTGTCTTTGACTGTCGTCAACAACCTGTTAAATACTAAAGACCACTTCAGTGTTCCTATCACAACTGCTGAGTTTGCTGTGATGAAGACAGCTTGCAGTTTTGCATTGCCACACATTATGGGTTGGGACCGTCTAACTAATCAGCAGTCCAGAGGGACAGTTGGCCTCCAATCGAAGGCGGACTCACAATTTTTAGACCTGGAATGGGAAAAGTGA 690 0.4275 MFNLSRLLPSTSSKFYNFSAFTSAVIELNPTLLLLSNYELAGYASDRVFAPYSVYKGKAAFSLSPFLPTFTKLDTGATVVERRGSIMMIFMHAIGERKYDWEKRQRFALSATEVGSLITMGPQDSCEFFHDPSMLSSNAGQVRKSLSIKPHANSNGYFVSLTVVNNLLNTKDHFSVPITTAEFAVMKTACSFALPHIMGWDRLTNQQSRGTVGLQSKADSQFLDLEWEK. 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05495 229 Gene3D Transcriptional Coactivator Pc4; Chain A 40 211 IPR009044 GO:0003677|GO:0006355
Seca2g05495 229 Pfam Whirly transcription factor 54 188 IPR013742 GO:0003697|GO:0006355|GO:0006952
Seca2g05495 229 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 41 229 IPR013742 GO:0003697|GO:0006355|GO:0006952
Seca2g05495 229 SUPERFAMILY ssDNA-binding transcriptional regulator domain 45 208 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05495 Seca-Chr2 141402119 141405182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05495 41 229 Whirly Transcription Factor Family AT1G71260 64.433 1.06e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Seca2g05495 Whirly 7.5e-54 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05495 K26561 - gmx:100817863 338.961