Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05494 ATGTTATTTATGCAACAAAGTAGGCGTGAGATGTGCATTCTGTCTGCATCTGGTGCCATCTCTAATGCCTCTCTTCGTCAACCAGCATCCTCAGGAGGCAACATTACATATGAGGGTCGGTTTGAGATTATTTCACTTACTGGTTCCTATGTTCGTAATGAACTTGGAGGTCGAAGTGGTGGTCTCAGTGTATGCTTGTCTAATTCTGATGGACAAATCATAGGTGGCGGAGTTGGTGGGCCCCTTAAAGCTGCTGGTCCAGTTCAGGTCATTGTTGGTACATTTTTTCTTGACACCAAGAAGGATACAGGTGCTGGTGTAAAAGGTGATGCCTCTGCTAGCAAGTTGCCATCACCAGTTGGTGAATCAGTATCAAGTTTAGGTTTCCGCCAAACAGTTGACTGTTCCAGTGGGAATCCAATCCGGGGAAATGATGAGCATCAAACTATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCATGTCACGCCTTCCCGGTCCACAGACTGGGGTGGTCATCCAGACTCGAGAAATGCTGGTTATGAGCTGACAGGAAGAACAGGTCATGGGGCACACCAGTCTCCTGAAAATGGAGGCTATGACCAAATTCCTGATTGA 624 0.4679 MLFMQQSRREMCILSASGAISNASLRQPASSGGNITYEGRFEIISLTGSYVRNELGGRSGGLSVCLSNSDGQIIGGGVGGPLKAAGPVQVIVGTFFLDTKKDTGAGVKGDASASKLPSPVGESVSSLGFRQTVDCSSGNPIRGNDEHQTMGGSHFMIQQLGLHVTPSRSTDWGGHPDSRNAGYELTGRTGHGAHQSPENGGYDQIPD. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05494 207 Gene3D - 1 108 - -
Seca2g05494 207 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 132 IPR039605 GO:0003680
Seca2g05494 207 Pfam Plants and Prokaryotes Conserved (PCC) domain 3 95 IPR005175 -
Seca2g05494 207 SUPERFAMILY AF0104/ALDC/Ptd012-like 4 96 - -
Seca2g05494 207 ProSiteProfiles PPC domain profile profile. 1 120 IPR005175 -
Seca2g05494 207 CDD DUF296 3 95 IPR005175 -
Seca2g05494 207 MobiDBLite consensus disorder prediction 165 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05494 Seca-Chr2 141389295 141394590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05494 1 207 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 54.425 4.77e-65 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05494 - - gmx:100809675 359.762