Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05493 ATGGAAAGAAGGTTGCCTCCTTTGTTGTTGTTGTTCTTGTTCTTGGTTTGTTCTCTGTTGCTATCTGTTTCTGGCGTCGACGTGGATTGCAACTGTGATGAGGAAGGGCTATGGAGCATACAGAGCATCTTGGTTTGCCAAAAAGTCAGTGACTTTTTCATTGCCATTGCATATTTTTCCATACCCCTTGAGCTCCTTTACTTTGTTAGCTACTCCAACGTCCCATTCAAATTGGTCTTTCTTCAGTTTACTGCCTTTATAGTCCTTTGTGGCTTGACCCATTTGCTCAATGCCTATACTTACTACGGCCCTCACTCCTTCCAGTTGTTTCTGTCTCTCACTGTTGCTAAATTCCTTACTGCTCTTGTTTCCTGTGCCACTGCAATTACCTTTCCCACCCTGATTCCTCTTCTTCTGAAAATCAAAGTGAGGGAGCTCTTCTTGAGGCAGAATGTGTTGGAATTGGGGCAAGAGGTTGGGATGATGAAGAAACAAAAGGAAACGAGCTGGCATGTTAGGATGCTGACCCGTGAGATTAGGAAATCTCTGGATAAGCATACCATCCTGTATACCACCCTTGTTGAGCTTTCCAAGGCCTTGGGCTTGCATAATTGTGCAGTTTGGATGCCTGATGAGGACAGGCGAGTAATGCATTTGACTCATGAGTTGAAATCAAGCTCAGCAAAGAAATTTCACAGTTCTATTCCTGTAAACGATCCAGATGTATTAGAGATAAGAAAGAGCAAGGGGGTGCGGATTTTGGGGCCTGATTCTGCACTAGGAACTGCAAGTAGTGGTGAATCTGGGGACTCGGGTGCTGTAGCAGCCATTCGCATGCCGATACTTCATGTTTCAAATTTCAAAGGGGGGACACCGGAGTTGGTTGAGACATCTTATGCTATACTGGTTTTGGTTCTTCCAAATTCAAACTCCAGGGCTTGGACCTCCCATGAGATGGAGATAGTGGAAGTAGTTGCTGACCAGGTGGCTGTTGCCTTGTCTCATGCGTCTGTTCTTGAGGAGTCTCAGCTAATGAGTCAGAAACTTGCAGAGCAAAACCGAGCATTGCAACAGGCTCAAAAAAATGCAATGATGGCCAGCCAGGCAAGGAGCTCATTTGAGAAAGTGATGAGTCATGGAATGCGGAGACCTATGCATTCAATCCTGGGTTTGCTTTCAATGTTTCAAGAGGATAATATAAGATCTGAGCAGAAGATTGTTATTGACACAATGTTGAAAGTTAGCAATGCACTCTCACATTTGATTAATGATGTAATGGAGATTGCAGCAAATGACAAAGGAAGCTTCCGGTTAGAGATGAAACCTTTCCATCTACATTCCATGTTGAGGGAAGCTTCTTGCATTGCCAAGTGTTTGTGTGTATATAAAGGCTTTGGTCTTGAAATTGATGTCCTTAGGTCTTTGCCTGATCTGGTAATAGGTGACGAGGCAAGATCTTTTCAAGTAATTTTGCATATGATTGGCTATTTGTTGAACATATATGATAGAGGGACTCTCATTTTTCGAGTTTTTCTTGAAAGTCACAGTGGGGATAAGGATGATAAAAATGTTGGAATATGGAGATCAAGCATGCAAAATGAATATGTACATATAAAATTTAATTTCCAGGTAACTGGTAATAGTTCCCATTCAGATGAATCAATTTTAACAAGAAATTATGCTGGCAAGAGGCACAGCAGCAATGAAACTAACGAGGGCCTGAGCTTTGGAATGTGCAAAACACTGGTGCAGACAATGTGGAATAATATGCAGATGATGCAAGGTAATATCTGGATATCAACAAACTCTCTGGGTTTGGCACAAGGGATGACACTTCTTCTCAAGTTTCAGATAGGATCATCACATGGAAGATTTGGTCTTGCTCCCAAAGATTTTTCAAACACACAGTTTAGAGGGCTTAAGGTGGTGTTAGCCGATGATGATGATATAAACAGGACTGTGACTAAGAAGCTGCTTGAGAAGCTGGGTTGCCAAGTAACTGCTGTTTCATCAGGTTTCGAATGTCTGGGAGCTATCACTGCCTCTGGTAATTCATTCAAAATTATCCTTTTGGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTTGCAAGAAGGATTCGGAAGTTCCAAAGCCGTAATTGGCCCTTGATTATTGCTCTTACAGCAAGTGCAGAAGAACACATAAAGGAAAGATGCCTTCAGGTGGGGATGAATGGATTGATTCGAAAACCGATCCTCCTCCATGAGATAGCGGATGAACTTAGAACAGTCCTGCTACGTGCAGGTGAAAAATTATGA 2301 0.4242 MERRLPPLLLLFLFLVCSLLLSVSGVDVDCNCDEEGLWSIQSILVCQKVSDFFIAIAYFSIPLELLYFVSYSNVPFKLVFLQFTAFIVLCGLTHLLNAYTYYGPHSFQLFLSLTVAKFLTALVSCATAITFPTLIPLLLKIKVRELFLRQNVLELGQEVGMMKKQKETSWHVRMLTREIRKSLDKHTILYTTLVELSKALGLHNCAVWMPDEDRRVMHLTHELKSSSAKKFHSSIPVNDPDVLEIRKSKGVRILGPDSALGTASSGESGDSGAVAAIRMPILHVSNFKGGTPELVETSYAILVLVLPNSNSRAWTSHEMEIVEVVADQVAVALSHASVLEESQLMSQKLAEQNRALQQAQKNAMMASQARSSFEKVMSHGMRRPMHSILGLLSMFQEDNIRSEQKIVIDTMLKVSNALSHLINDVMEIAANDKGSFRLEMKPFHLHSMLREASCIAKCLCVYKGFGLEIDVLRSLPDLVIGDEARSFQVILHMIGYLLNIYDRGTLIFRVFLESHSGDKDDKNVGIWRSSMQNEYVHIKFNFQVTGNSSHSDESILTRNYAGKRHSSNETNEGLSFGMCKTLVQTMWNNMQMMQGNIWISTNSLGLAQGMTLLLKFQIGSSHGRFGLAPKDFSNTQFRGLKVVLADDDDINRTVTKKLLEKLGCQVTAVSSGFECLGAITASGNSFKIILLDLHMPEMDGFEVARRIRKFQSRNWPLIIALTASAEEHIKERCLQVGMNGLIRKPILLHEIADELRTVLLRAGEKL. 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05493 766 PIRSF Ethylen_sen_hybr_HK 2 766 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Seca2g05493 766 ProSiteProfiles Response regulatory domain profile. 641 759 IPR001789 GO:0000160
Seca2g05493 766 SMART REC_2 640 755 IPR001789 GO:0000160
Seca2g05493 766 SUPERFAMILY CheY-like 636 759 IPR011006 -
Seca2g05493 766 SMART HisKA_10 369 434 IPR003661 GO:0000155|GO:0007165
Seca2g05493 766 SMART gaf_1 184 343 IPR003018 GO:0005515
Seca2g05493 766 Gene3D - 335 432 - -
Seca2g05493 766 CDD HATPase_ETR2_ERS2-EIN4-like 475 614 - -
Seca2g05493 766 Gene3D - 640 765 - -
Seca2g05493 766 Pfam Response regulator receiver domain 642 754 IPR001789 GO:0000160
Seca2g05493 766 Pfam His Kinase A (phospho-acceptor) domain 370 433 IPR003661 GO:0000155|GO:0007165
Seca2g05493 766 Pfam GAF domain 186 333 IPR003018 GO:0005515
Seca2g05493 766 ProSiteProfiles Histidine kinase domain profile. 376 620 IPR005467 -
Seca2g05493 766 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 28 762 - -
Seca2g05493 766 FunFam Ethylene receptor 4 336 430 - -
Seca2g05493 766 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 354 434 IPR036097 GO:0000155|GO:0007165
Seca2g05493 766 FunFam Ethylene receptor 638 762 - -
Seca2g05493 766 Coils Coil 339 369 - -
Seca2g05493 766 SUPERFAMILY GAF domain-like 187 336 - -
Seca2g05493 766 Gene3D - 161 334 IPR029016 -
Seca2g05493 766 Gene3D - 433 620 IPR036890 -
Seca2g05493 766 CDD HisKA 367 429 IPR003661 GO:0000155|GO:0007165
Seca2g05493 766 CDD REC_ETR-like 640 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05493 Seca-Chr2 141378542 141382449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05493 28 764 Miscellaneous Gene Families AT3G04580 61.200 0.0 906
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca2g05493 GAF 7.7e-13 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05493 K14509 - gmx:100805023 1283.86