Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05492 ATGGCCAACCCATGGTGGAGCGACCCAGTGGGTCTCTCTGGAGTGGACAGCAACCCATCCCCCATGAAAAAGCCCGATCTGGGTTTCTCCATGAACGACAATACCCATAAAGAAGATCAGGAGAAAGAAAACAGCGAGGAGGCCAAAGAAGGAGGAGCTATCGAGGCGGGCCCCATGCGTCGGGCCAGGGGCCGTCCACCGGGCTCAAAGAACAAGCCCAAACCGCCTGTATTTGTGACCAGAGACGGCCCAAATGCACTTCGAAGCCACGTCATGGAGATAGCAAACGGAGCAGACATCGCCGATAGCTTGATTCAGTTCGCGAGAAGGCGTCAGAGAGGTGTCTGCGTCCTCAGCGGCACCGGCACCGTCACCAACGTCACTCTCCGGCAGCCGTCGTCTCCCGGAGCTGTGATGGCACTTCAAGGCCGCTTCGAGATAATATCGTTGACCGGTTCGTTCCTGCCGGGAGCTTCACCGCCGGGATCGACGGGTCTAACGGTTTACATGGCGGGAGGTCAGGGACAAGTGGTGGGCGGTGGGGTGGTGGGTCCGCTGGTAGCATCAGGAGCGGTTATGATAATGGCGGCTACATTTTCCAATGCTGTGTATGAGCGGTTACCGTTAGCGATTGAGGAGGATGAACACGTTGGTGGTGGAGATCAAGGTGAGGGTTCATCTTCAATTCTTCCTGCAGCTGCAGCGTATAATAATTTGGCTCCTCCACCTCCACAGTTGAACCATGAAGCTTATTCTTCTCCTTTTATCCCAGGCTGA 777 0.5586 MANPWWSDPVGLSGVDSNPSPMKKPDLGFSMNDNTHKEDQEKENSEEAKEGGAIEAGPMRRARGRPPGSKNKPKPPVFVTRDGPNALRSHVMEIANGADIADSLIQFARRRQRGVCVLSGTGTVTNVTLRQPSSPGAVMALQGRFEIISLTGSFLPGASPPGSTGLTVYMAGGQGQVVGGGVVGPLVASGAVMIMAATFSNAVYERLPLAIEEDEHVGGGDQGEGSSSILPAAAAYNNLAPPPPQLNHEAYSSPFIPG. 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05492 258 ProSiteProfiles PPC domain profile profile. 84 225 IPR005175 -
Seca2g05492 258 MobiDBLite consensus disorder prediction 1 79 - -
Seca2g05492 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 220 IPR014476 GO:0003680
Seca2g05492 258 Gene3D - 87 216 - -
Seca2g05492 258 SUPERFAMILY AF0104/ALDC/Ptd012-like 85 209 - -
Seca2g05492 258 MobiDBLite consensus disorder prediction 30 56 - -
Seca2g05492 258 CDD DUF296 88 171 IPR005175 -
Seca2g05492 258 Pfam Plants and Prokaryotes Conserved (PCC) domain 88 201 IPR005175 -
Seca2g05492 258 FunFam AT-hook motif nuclear-localized protein 87 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05492 Seca-Chr2 141362190 141362966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05492 1 252 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 56.115 4.69e-82 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05492 - - qsu:112038015 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05492 2 141362190 141362966 Seca2g05492 2 141362190 141362966 ECH