Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05491 ATGTCAAATCCGAAAGTTTTCTTTGATATTGTAATTGGAAAGTTGAAAGCTGGGCGAGTAGTAATGGAACTGTTTGCTGATGTCACCCCAAAAACAGCTGAAAACTTCAGGGCTCTATGCACTGGGGAAAAGGGGATTGGAAATTCTGGGAAACTTTTACACTACAAAGGATCTGCATTTCATCGTATTATTCCAGAGTTCATGTGTCAGGGAGGAGATTTTACGAGAGGGAATGGAACAGGAGGAGAGTCAATTTACGGGGCCAAATTTGCAGATGAGAATTTCAAGCTGAAGCATACTGGGCCTGGTATTCTTTCCATGGCAAATGCTGGACCCAATACAAATGGTTCCCAGTTCTTTATATGTACTACAAAGACTGAATGGCTTGATGGTAAACATGTTGTGTTTGGGAAAGTTGTTGATGGATACAGTGTAGTGAAGGAGATGGAGAAGGTGGGTTCAGGAAGTGGCAGGACTTTGGAACCAGTAATAATTGAAGATTGTGGGCAGATAGCAGAGAACTGA 525 0.421 MSNPKVFFDIVIGKLKAGRVVMELFADVTPKTAENFRALCTGEKGIGNSGKLLHYKGSAFHRIIPEFMCQGGDFTRGNGTGGESIYGAKFADENFKLKHTGPGILSMANAGPNTNGSQFFICTTKTEWLDGKHVVFGKVVDGYSVVKEMEKVGSGSGRTLEPVIIEDCGQIAEN. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05491 174 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 170 IPR002130 GO:0000413|GO:0003755
Seca2g05491 174 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 55 72 IPR020892 GO:0003755|GO:0006457
Seca2g05491 174 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Seca2g05491 174 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 60 72 IPR002130 GO:0000413|GO:0003755
Seca2g05491 174 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 146 IPR002130 GO:0000413|GO:0003755
Seca2g05491 174 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 103 118 IPR002130 GO:0000413|GO:0003755
Seca2g05491 174 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 130 IPR002130 GO:0000413|GO:0003755
Seca2g05491 174 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 10 169 IPR002130 GO:0000413|GO:0003755
Seca2g05491 174 CDD cyclophilin_ABH_like 4 169 - -
Seca2g05491 174 FunFam Peptidyl-prolyl cis-trans isomerase 1 172 - -
Seca2g05491 174 PIRSF Peptidylpro_ismrse 1 174 IPR024936 GO:0003755
Seca2g05491 174 Gene3D - 1 174 IPR029000 -
Seca2g05491 174 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 171 - -
Seca2g05491 174 SUPERFAMILY Cyclophilin-like 2 171 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05491 Seca-Chr2 141355625 141357315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05491 18 166 U-box Gene Family AT5G67530 49.342 7.07e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05491 K01802 - vvi:100261571 323.553