Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05488 ATGGATTCCTCATTTTTTGTTCCACACTCATCAAATTTTGAATTCCCTTCTGAGTCCTTTCCTAATTACCAATCCCTTCCCTTCAATGAAAATGACTCTGAGGAAATGTTTCTTTATGAAGTTCTGTCACAGGCTGGTGCAGAGTCCTTTGAAAACACAGCATCATCAGCATCAGTATCTCATTCAAGAGAAGAAGAGGTGAGTTCGAAGGAAGAGGTTTCTTACAGAGGGGTACGAAGGAGGCCATGGGGGAAGTATGCTGCAGAGATAAGGGACTCTACGAGGAATGGTACGAGGGTTTGGTTGGGAACCTTTGACACTGCTGAGGCTGCTGCTTTGGCTTATGATCAAGCTGCATTAGCAATGAGAGGCTCAATGGCTGTGTTGAATTTCCCACCTGAGATGGTTCAACAGTCACTTCAAAACATGGACTGTGGTGCTTTTCGAGAAGGGTGCTCTCCTGTTTTGGAGTTAAAGAAGAGACACTCCATCAAGAGGAAATCGGAGAGCAAGAAGTTGAGAAAGAAGCATGATGAAGAGGTCAAGTCAGAAAACAGGGTGGTGTTGGAGGATTTAGGGGCAGAGTATCTGGAACAGCTTCTTATTCTGTCCCAGGAAGATGCTTGCTAG 630 0.4492 MDSSFFVPHSSNFEFPSESFPNYQSLPFNENDSEEMFLYEVLSQAGAESFENTASSASVSHSREEEVSSKEEVSYRGVRRRPWGKYAAEIRDSTRNGTRVWLGTFDTAEAAALAYDQAALAMRGSMAVLNFPPEMVQQSLQNMDCGAFREGCSPVLELKKRHSIKRKSESKKLRKKHDEEVKSENRVVLEDLGAEYLEQLLILSQEDAC. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05488 209 CDD AP2 75 132 IPR001471 GO:0003700|GO:0006355
Seca2g05488 209 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Seca2g05488 209 SUPERFAMILY DNA-binding domain 75 133 IPR016177 GO:0003677
Seca2g05488 209 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
Seca2g05488 209 MobiDBLite consensus disorder prediction 1 27 - -
Seca2g05488 209 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Seca2g05488 209 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Seca2g05488 209 PANTHER DNA-BINDING DOMAIN 45 202 IPR044808 GO:0003700|GO:0009873
Seca2g05488 209 Gene3D AP2/ERF domain 74 133 IPR036955 GO:0003700|GO:0006355
Seca2g05488 209 MobiDBLite consensus disorder prediction 52 71 - -
Seca2g05488 209 FunFam Ethylene-responsive transcription factor 2 73 134 - -
Seca2g05488 209 Pfam AP2 domain 75 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05488 Seca-Chr2 141332932 141333561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05488 26 201 AP2-EREBP Transcription Factor Family AT3G23240 56.044 1.91e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca2g05488 AP2 2.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05488 K14516 - tcc:18600104 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05488 2 141332932 141333561 Seca2g05488 2 141332932 141333561 ECH