Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05487 ATGGAACAATCAGTTTTGGATGACATAATCAATCGACTGTTAGAAGTTCGCTGCCGTCCAGCGAAGCAGGTTCAACTATCGGAGTCTGAGATCCGCCAACTCTGCGCAGCTGCTAGAGAGATTTTCTTGCAACAACCTAATTTATTAGAGCTCGAAGCTCCCATCAAGATTTGTGGTGATGTGCATGGTCAATTTTCCGATCTTTTGAGGCTTTTTGAGTATGGTGGATTACCTCCTGAGGCTAACTACTTGTTTTTGGGGGATTATGTGGATAGGGGGAAGCAGAGTTTAGAAACAATTTGCCTTCTCCTTGCTTATAAAATAAAATATCCTGAGAACTTTTTCTTGTTAAGGGGAAACCATGAATGTGCTTCTATAAATCGGATATATGGTTTTTATGATGAGTGCAAGAGAAGGTTCAATGTGAGGTTATGGAAGACATTTACAGACTGCTTCAATTGCCTGCCTGTGGCAGCCCTCGTCGATGAAAAGATTTTGTGTATGCATGGGGGACTTTCTCCCGACTTGCATAATTTGGATCAGATTAGAAATCTACAGCGGCCTACTGATGTTCCTGATACAGGTTTGCTGTGTGATCTTCTCTGGTCTGACCCGAGCAAAGATGTTCAAGGATGGGGAATGAATGACAGGGGAGTTTCATATACATTTGGTGCTGATAAGGTCTCAGAGTTTCTTCAGAAACATGATCTTGATATAATTTGTCGTGCGCATCAGGTTGTGGAGGATGGGTACGAGTTCTTTGCTAACCGACAGCTTGTAACAATATTTTCAGCACCTAATTATTGTGGGGAGTTTGACAATGCCGGTGCTATGATGAGTGTTGATGAGACACTAATGTGCTCCTTCCAAATATTAAAGCCAGCTGATAAAAAAACAAAGCTCAATTTTGGAAGCACAACCACTGCTAAGCCTGGAAACTCTCCTGCAGGTGTAAAGATATTTGTGAATGTCAATCTTCATCGCAAATTGGCATTTTCATGCGCACTGGCTGGCTTTTGTATCTGGCTGAGAATTGATTTTCCTTCCTGGGTGCAAAAGTATGAAATTATTTGCCGAAAAGCTGCCACTACTACTGGTCAGCTTGGTCCTAAACTTCTAATGGTTGCAAGAAAAGGAAACTCAAGTTCCATTCGTCTACTATGA 1164 0.4184 MEQSVLDDIINRLLEVRCRPAKQVQLSESEIRQLCAAAREIFLQQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAALVDEKILCMHGGLSPDLHNLDQIRNLQRPTDVPDTGLLCDLLWSDPSKDVQGWGMNDRGVSYTFGADKVSEFLQKHDLDIICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKTKLNFGSTTTAKPGNSPAGVKIFVNVNLHRKLAFSCALAGFCIWLRIDFPSWVQKYEIICRKAATTTGQLGPKLLMVARKGNSSSIRLL. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05487 387 SUPERFAMILY Metallo-dependent phosphatases 21 299 IPR029052 -
Seca2g05487 387 SMART pp2a_7 26 296 IPR006186 GO:0016787
Seca2g05487 387 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 9 300 - -
Seca2g05487 387 FunFam Serine/threonine-protein phosphatase 52 305 - -
Seca2g05487 387 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Seca2g05487 387 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Seca2g05487 387 Gene3D - 1 305 IPR029052 -
Seca2g05487 387 CDD MPP_PP1_PPKL 5 294 - -
Seca2g05487 387 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Seca2g05487 387 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Seca2g05487 387 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Seca2g05487 387 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Seca2g05487 387 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Seca2g05487 387 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Seca2g05487 387 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Seca2g05487 387 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05487 Seca-Chr2 141315421 141320393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05487 33 242 Calmodulin-binding Proteins AT5G63870 30.279 4.63e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05487 K06269 - gmx:100816262 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05487 2 141315421 141320393 Seca2g05487 2 141315421 141320393 ECH