Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05486 ATGTGTGAAGAAGCTCTGAGGAAGAAACAGTACCAAGTGTTAGAGGAAGTGGGGCGTGGAAGATTCGGCACTGTGTTCCGTTGCTTCCACCCAATTTCAAACCAATTCTATGCTTGCAAAGTCATCGATAAGACCCTCCTCACCGATTCCATTGATCGTCAATGCCTAGAAAATGAGTCCAAATTCATCACCTATCTCTCTCCACATCCCAATATTCTTCAAACCTTCGACGCCTTTGAAGACGCAGATTTCTCAACAATCGTCTTCGATCTCTGTGACCCTCTCACCCTCTTTGACCGCATCGCCGATCGTCCCTTGCCGGAGCCACACGCCGCTTCCATCATGAAGCAGCTTCTAGAAGCTCTTGCACATTGCCACAGGCTTGGAATAGCGCACAGAGACATAAAGCCTGATAACCTGTTGTTTGATTCGAGGGATAACCTTAAAGTCGCCGACTTTGGTTCGGCGGAGTGGTTTGGCGACGGAAGGAGCATGAGTGGGGTGGTGGGTACGCCGTATTACGTGGCGCCGGAGGTTTTGATGGGGAGAGAGTACAATGAGAAAGTGGATGTTTGGAGTAGTGGTGTGATTCTTTACACAATGTTGGCTGGGATTCCACCTTTTTATGGAGACTCTGCTGCAGAGATTTTTGAGGCTGTGGTGAGGGCTAATCTCAGGTTTCCAACGAGGATTTTCAGGTCTGTGTCTTCCTCTGCTAAGGATCTCATTAGGAAGATGATTTGTAGGGATCCCTCTAGGAGAATATCAGCAGAGCAAGCCTTGAGACACCCATGGATATTGAGTGGTGGTGTGACTAGTGATCTAACTTGA 831 0.4826 MCEEALRKKQYQVLEEVGRGRFGTVFRCFHPISNQFYACKVIDKTLLTDSIDRQCLENESKFITYLSPHPNILQTFDAFEDADFSTIVFDLCDPLTLFDRIADRPLPEPHAASIMKQLLEALAHCHRLGIAHRDIKPDNLLFDSRDNLKVADFGSAEWFGDGRSMSGVVGTPYYVAPEVLMGREYNEKVDVWSSGVILYTMLAGIPPFYGDSAAEIFEAVVRANLRFPTRIFRSVSSSAKDLIRKMICRDPSRRISAEQALRHPWILSGGVTSDLT. 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05486 276 Gene3D Transferase(Phosphotransferase) domain 1 96 273 - -
Seca2g05486 276 SUPERFAMILY Protein kinase-like (PK-like) 7 268 IPR011009 -
Seca2g05486 276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Seca2g05486 276 SMART serkin_6 11 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05486 276 ProSiteProfiles Protein kinase domain profile. 11 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05486 276 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 268 - -
Seca2g05486 276 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Seca2g05486 276 FunFam Phosphoenolpyruvate carboxylase kinase 2 3 276 - -
Seca2g05486 276 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Seca2g05486 276 Pfam Protein kinase domain 11 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05486 276 CDD STKc_CAMK 10 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05486 Seca-Chr2 141306143 141307400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05486 11 274 EF-hand Containing Proteins AT1G50700 40.299 2.66e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca2g05486 Pkinase 5.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05486 - K08794 gmx:548089 443.351