Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05466 ATGTCTTCATCATTACCTGTTCTTCCCACCCCCCTGGAAAACAAGTATATGAAACCCCCGGATTCTTTTCAGCTTTCGCCGATCAGAGATCTGACTGCAAATCCTGCCTCACTGCAAGCTACATCATCAAATTCAATCAGAAGTGTTGGGCAGGTGTTTTCATCCCCAGCTGAATATCCTGGTGACATCCCTTTTTCCTCTGTTACACAGCATGATAGGCAATATCAAGAATCTCCCTTCATTTCTCAGACATTAGGTGACAACGTGTCTTCCGAAATACATTCAACAACATTCGTTTCTCACCCTCAAGAAAATGATGATATTTCCTGGGGACCAGATCCATTTCAGGATATTCTTAGTTTTCCTGAAAATGTTTCTGTCCAGCATGATCAGGTGGAAAACAGTGCCTGTTTCATGAATGATGACAATGTAAAAAAATCGGATTTTGGAGAGTGGGTTGATCAGTTAATGTCTATTGATGATTCTCTTCACCCAAATTGGAATCAGCTTCTTGGTGAGGACAATGTATCAGAATCAAAACCAAAGGCAACACAGGTTTCCCAGCAGCAGCAAATACCATCTGGAGAAGGCAGTGGTCTTTGTAATTCATCATCAACTGCACCGCAAACTAAGCCTAGAATGCGTTGGACGCCAGAACTTCATGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGTGGTAGTGAAAAGGCTACTCCAAAGGGTGTCTTGAATCTGATGAAAGTTGAAGGCCTTACCATCTATCATGTAAAAAGTCACCTACAGAAGTATAGAACTGCCAGATACAAACCTGAGTCATCAGAAGATGCAGGAACTTCTGAAAAAAAGATGAGTTCCATTGAAGAAATGAAATCTCTGGACTTGAAAACATTGGTACTAATAAGATGGCCCAGACAAGTTTGA 921 0.4169 MSSSLPVLPTPLENKYMKPPDSFQLSPIRDLTANPASLQATSSNSIRSVGQVFSSPAEYPGDIPFSSVTQHDRQYQESPFISQTLGDNVSSEIHSTTFVSHPQENDDISWGPDPFQDILSFPENVSVQHDQVENSACFMNDDNVKKSDFGEWVDQLMSIDDSLHPNWNQLLGEDNVSESKPKATQVSQQQQIPSGEGSGLCNSSSTAPQTKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPESSEDAGTSEKKMSSIEEMKSLDLKTLVLIRWPRQV. 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05466 306 Gene3D - 210 269 - -
Seca2g05466 306 MobiDBLite consensus disorder prediction 172 213 - -
Seca2g05466 306 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 179 285 IPR044848 GO:0003700
Seca2g05466 306 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 265 IPR006447 GO:0003677
Seca2g05466 306 MobiDBLite consensus disorder prediction 1 27 - -
Seca2g05466 306 FunFam Myb family transcription factor 210 268 - -
Seca2g05466 306 MobiDBLite consensus disorder prediction 172 212 - -
Seca2g05466 306 SUPERFAMILY Homeodomain-like 209 265 IPR009057 -
Seca2g05466 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 268 IPR017930 -
Seca2g05466 306 MobiDBLite consensus disorder prediction 265 284 - -
Seca2g05466 306 Pfam Myb-like DNA-binding domain 213 264 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05466 Seca-Chr2 141123523 141128428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05466 1 286 G2-like Transcription Factor Family AT5G29000 43.689 2.22e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca2g05466 Myb_DNA-binding 8.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05466 - - gmx:100803267 474.937