Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05464 ATGGCCCCAAATCCTAGAGTTATTAAGGCCTTTAGCTTTATGAAGGACTTAGGGATTTCTACCGAGGAGGTGAAGCCGGTGTTGATGGAGTTGTTAAGCGTTTATAATGGAAGCTGGGAACTTATTGAAGATGACAATTACCAAACACTCATAGATGCATATTTTGATTCTAAGAAAGATAAGGGAGTTGAAGGTAAGAGAAAAGCTTCTTTCGATCGTCATAGTGGAGAAAGACCATCACAGAAAATAAACTTGGTGGATGAAGATGACCAGGAAATCATTGAGTCCTCTCAAACTTCCATGGAAGATGTTAAGCCTACGACCAGTTCACAAGCACCACATACAACATTGAGGGGGGCAGAGAAGATTTCCAATAAAGCATCATCTGCAGAGCATCATGGTCATTTTGAAAAAGAGCTTGTGAAATCAAGAAAAAAGAAACCTAAGTTACAATCTCGACCTATTTCAACAAATTATAATGGTAATGGTTCATCTGAGGCTGCAAATGGAAATCATTGTGTCAACCCTCTGTCAACTCATAATCTGGATATGCAAAGTACAGATACTAAATTAGCATGCAATAATAATACCACAACTCATAAGGGAGATATTATGATTGCTTCTTCACGTCAGGGAGAAGTTAAAATATCTCTAAATTGTGACTCTGCCTTGCAACAATCAAACTTCTGCACTCCTAATTTGGATGCCGTTATAAAATCCACAGAAGAGAAGTACCTTAGTTCTTGCAAGATTGTTGGGCCTCAATTTTCTATGGTAAAACTATTAGATGATTTATGCAGGAGTTATTTGAAGTCGGGATATAGAAAGGGATCAAGTTCCAAGCATGCCAATTCACAAAACTTGGCATGTCTACCACAACAATCTGTTACTCAACAAGAAAGGAATTCCTTTCATTTTATCAGTGACATAACAAAAGGTTCAGAAAAGGTGAAAATATCATTAATAGATGAAATTGGTAATGGGGACTTACCAAAGTTTAATTACATACCACATAATGTAATATATCAAAGTGCTAATGTAAATATTTCATTGGCTCGGATTGCGGATGAGGGTTGTTGTTCTGATTGTTCAGGCGATTGTCTTTCCTCATCATTTCCTTGTGCATGTGCTCAAGAAACTGGTGGAGAGTTTGCTTACACACCACAAGGTTTATTGAAAGAAGAATTTCTAACAGCTTGCTTGTCTATGAAGGATGAACCTCAAGATCATCATTATGTGTACTGTCAAGAGTGTCCATTGGAGAAGGCTAAGAATGAGTACATGCCTGAAAAATGCAAGGGGCATTTAGTTAGGAAGTTTATAAAGGAATGTTGGACCAAATGTGGATGTGACATGTCCTGCGGAAATCGAATAGTGCAAAGAGGTTTAAGATGCAAATTGCAGGTGTTCTTAACTCGTGAAGGTAAGGGATGGGGACTTAGAACACTAGAAAACTTGCCGAAGGGAACTTTTGTATGTGAATATGTTGGGGAAATATTAACCAACACAGAGTTATACGAAAGGAATGTGCAGAATCGTGGCAGTGACAGACATACATATCCTGTAACTCTTGATGCAGACTGGGGCTCAGAAGGGGCATTAAAGGATGAGGAGGCACTATGTTTAGATGCAACATATAATGGAAATGTTGCCAGGTTCATCAATCATAGATGCTATGATGCAAATCTCATAGATATTCCTGTTGAAGTGGAGACCCCTGATCACCACTATTATCATGTTGCCTTCTTTACCAACAGGAAAGTGAATGCATATGAGGAGTTAACGTGGGATTATGGTATTGATTTTGATGATCATGACCATCCTATTGAAGCATTTCGATGTTGTTGTGGAAGCGCGTTCTGCGGTGATAAGAAACAAAAAGGGAAAAGAAAAATTGAAAATTCAGTTCATGTGACGAGGAATGTGAACTCAACCAATTGA 1941 0.3833 MAPNPRVIKAFSFMKDLGISTEEVKPVLMELLSVYNGSWELIEDDNYQTLIDAYFDSKKDKGVEGKRKASFDRHSGERPSQKINLVDEDDQEIIESSQTSMEDVKPTTSSQAPHTTLRGAEKISNKASSAEHHGHFEKELVKSRKKKPKLQSRPISTNYNGNGSSEAANGNHCVNPLSTHNLDMQSTDTKLACNNNTTTHKGDIMIASSRQGEVKISLNCDSALQQSNFCTPNLDAVIKSTEEKYLSSCKIVGPQFSMVKLLDDLCRSYLKSGYRKGSSSKHANSQNLACLPQQSVTQQERNSFHFISDITKGSEKVKISLIDEIGNGDLPKFNYIPHNVIYQSANVNISLARIADEGCCSDCSGDCLSSSFPCACAQETGGEFAYTPQGLLKEEFLTACLSMKDEPQDHHYVYCQECPLEKAKNEYMPEKCKGHLVRKFIKECWTKCGCDMSCGNRIVQRGLRCKLQVFLTREGKGWGLRTLENLPKGTFVCEYVGEILTNTELYERNVQNRGSDRHTYPVTLDADWGSEGALKDEEALCLDATYNGNVARFINHRCYDANLIDIPVEVETPDHHYYHVAFFTNRKVNAYEELTWDYGIDFDDHDHPIEAFRCCCGSAFCGDKKQKGKRKIENSVHVTRNVNSTN. 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05464 646 Coils Coil 642 646 - -
Seca2g05464 646 SMART set_7 465 605 IPR001214 GO:0005515
Seca2g05464 646 MobiDBLite consensus disorder prediction 97 123 - -
Seca2g05464 646 CDD SET_SETDB-like 331 599 - -
Seca2g05464 646 ProSiteProfiles Pre-SET domain profile. 359 462 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca2g05464 646 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 631 - -
Seca2g05464 646 MobiDBLite consensus disorder prediction 62 89 - -
Seca2g05464 646 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 643 IPR025776 -
Seca2g05464 646 Gene3D - 1 60 IPR043017 -
Seca2g05464 646 MobiDBLite consensus disorder prediction 125 144 - -
Seca2g05464 646 Gene3D SET domain 287 608 IPR046341 -
Seca2g05464 646 FunFam SET-domain containing protein lysine methyltransferase family protein 310 624 - -
Seca2g05464 646 Pfam Ubiquitin-binding WIYLD domain 6 58 IPR018848 -
Seca2g05464 646 Pfam Pre-SET motif 310 457 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca2g05464 646 ProSiteProfiles SET domain profile. 465 599 IPR001214 GO:0005515
Seca2g05464 646 MobiDBLite consensus disorder prediction 152 171 - -
Seca2g05464 646 Pfam SET domain 477 599 IPR001214 GO:0005515
Seca2g05464 646 SUPERFAMILY SET domain 317 621 IPR046341 -
Seca2g05464 646 MobiDBLite consensus disorder prediction 62 171 - -
Seca2g05464 646 SMART preset_2 307 449 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05464 Seca-Chr2 141104314 141117441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05464 441 599 C2H2 Transcription Factor Family AT2G23740 43.125 6.15e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca2g05464 Pre-SET 1.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05464 - - gsj:114402909 874.389