Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05460 ATGGCTTTGTTGAAACACTTCTATTGCATATTTGGACTTTGCTTTTTGAAATTTCTAGAAACATTAATTGGGCTATTGGATGCTGACAGTGCTGAACAAGAAGGAATAAAAGTGAATCCCATTGAACTGAGTCACTTTGTGGACTTCATCAAACAAAATAAACTCCAGACAGAGAGCTTCATTATTGGGTCCAATCAGTACTTGGTCACGTCAATTCATGAGAATTGGTTTAGTGCAAGGTGCATAAACACATCCAAGCCTGGTGGTGAAGGTGCAATTGTCATGCAAACAGCAGCATATATCTTGGTTGCTCTATATGAAGGTTCCATTGGTCCGGCATCTCGTGCTATGGCAGCTGCTGATCAGTTAACTTGGCAATTAGGAAGAAAAAATCTTTAG 399 0.396 MALLKHFYCIFGLCFLKFLETLIGLLDADSAEQEGIKVNPIELSHFVDFIKQNKLQTESFIIGSNQYLVTSIHENWFSARCINTSKPGGEGAIVMQTAAYILVALYEGSIGPASRAMAAADQLTWQLGRKNL. 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05460 132 PANTHER OS05G0241400 PROTEIN 31 132 - -
Seca2g05460 132 Gene3D Dynein light chain 2a, cytoplasmic 21 131 - -
Seca2g05460 132 Pfam Profilin 31 127 IPR005455 GO:0003779
Seca2g05460 132 SUPERFAMILY Profilin (actin-binding protein) 31 127 IPR036140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05460 Seca-Chr2 141079372 141081144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05460 31 132 Carbohydrate Esterase AT4G19410 66.667 5.82e-46 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05460 - K19882 gmx:100811973 195.282