Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05446 ATGAGGGAAGTAGAACGAGTACCTCAAAGCGAATACTCAGAGGAATTGCAGCAAGTGGCATTGGCAGAGCCGGCTTGGAAGAAGAAGAAGCATCTATCGAAGCAACTATCAATGTGCGGAACGCCGGGAGACATTGCCTGGGAGAGAAGGCGCCGGCAGATTCACCGGCAAGAGCGACGGAGAAACAGTATCAACGACTCTGATGATCTCACCGACGAAGATCTACACGAGCTTAGAGGCTGCATAGAATTGGGATTTGGATTCAATGAGGAAGATGGACAGACACTATGCAACACCTTACCCGCTCTTGATCTTTATTTCGCAGTTAACCGACAGCTGTCAACTAGCCCTGTATCCACACCTGATCATAGCCGTGCATCCTCTTTTGGGAGCGTTAGCTGTACTGATCCTGAATCTTGGAAGATTTGTAGCCCAGGTGGTCGGTGTGTATATGCAGGGGATGATCCGGCACATGTAAAGACCAAGCTAAGGCATTGGGCTCAGGCCGTTGCTTGTTCTGTAATGCATGCTATGGCTCCCGACGCTTCCGATGCACTTGCAGTGAGGCAGAAAGTTCAACTATTTCTCAACGCTGCTCGTACTGGCAATCTCGATCTCTTAAAGAATTTGGCGGCGCAGTTGGATGAGGGCAAGGATTTAACGAAAACAGTAGAAGCAATCAAAGACGCTAACAAGCGAGGAGCATTGCATTTTGCAGCTCGTGAAGGCCAGAATGAGGTTTGCAAAGGTGAGACTGCTCTCATTCATGCTGCTCGTCAGGGACACACAGCCACTGCTAAATTTCTGCTTGACCATGGTGCCGATCCTACTATAGCTAGTAATTTAGGGGCTACTGCCTTGCACCATTCTGCAGGGATAGGAGATACTGAGCTGCTCAAGTATTTGCTGTCCAGAGGAGTTAATCCTGATCTAGAAAGTGATGCAGGAACGCCTTTGGTTTGGGCTGCCGGTCATGCCCAACAAGCTGCTGTCAGTGTTCTATTAGAACATGGTGCAAATCCTAATGCTGAAACTGATGATGGTATTACCCCACTCCTTTCTTCTGTGGCAGCTGGTTCTTTGGCATGTTTAGAGCTGTTAATTCAGGCAGGTGCTAAAGTAAATATTAGCGCTGGTGGAGCAACACCTTTGCACATTGCAGCTGATAATGGGAGTCTAGAACTTATAAACTGCTTATTGAAAGCTGGAGCTGATCCTAATATCTCTGATGAGGATGGTGTTAAGCCCATACAAGTTGCAGCTGCAAGGGGTAATCGAGTAGCTGTTGAAATACTATTCCCCTTGACGTCCAAAATTGATACTGTTCCAACTTGGACTATTGATGGGATACTTGAGTACATGCAATCTGAAACTAAAAAGCAGCAGGATGAATTGGTATATGCTAAAGAAACTAATCAGCCCAAGGATGCTATTCGGGAGCAAAATATCCCTGAGGTGGAACCTGAAGCAAAAAGGAGGGTAGCAGAAGCTAAATCAAGAGGGGATGAGGCTTTTAAAAGGAAAGACTATCATATGGCTATAGATTCCTATACACAAGCAATTGATCTGAATCCCACTGATGCTACGTTGCTATCCAATAGGAGTCTTTGTTGGATTAGGCTGGGTCAAGCTGATCATGCTTTAGCTGATGCAAAGGCCTGCAGAGCATTAAGACCAGATTGGCCAAAAGCTTGTTATAGGGAAGGGGCAGCTTTGCGTAAGTTTGATGAAGCTGCAAATGCTTTCTATGAGGGAGTAACACTTGATCCTGAGAATAAGGAGCTTGTAAATGCATTCAGGTCTTCATACTACTAA 1815 0.4606 MREVERVPQSEYSEELQQVALAEPAWKKKKHLSKQLSMCGTPGDIAWERRRRQIHRQERRRNSINDSDDLTDEDLHELRGCIELGFGFNEEDGQTLCNTLPALDLYFAVNRQLSTSPVSTPDHSRASSFGSVSCTDPESWKICSPGGRCVYAGDDPAHVKTKLRHWAQAVACSVMHAMAPDASDALAVRQKVQLFLNAARTGNLDLLKNLAAQLDEGKDLTKTVEAIKDANKRGALHFAAREGQNEVCKGETALIHAARQGHTATAKFLLDHGADPTIASNLGATALHHSAGIGDTELLKYLLSRGVNPDLESDAGTPLVWAAGHAQQAAVSVLLEHGANPNAETDDGITPLLSSVAAGSLACLELLIQAGAKVNISAGGATPLHIAADNGSLELINCLLKAGADPNISDEDGVKPIQVAAARGNRVAVEILFPLTSKIDTVPTWTIDGILEYMQSETKKQQDELVYAKETNQPKDAIREQNIPEVEPEAKRRVAEAKSRGDEAFKRKDYHMAIDSYTQAIDLNPTDATLLSNRSLCWIRLGQADHALADAKACRALRPDWPKACYREGAALRKFDEAANAFYEGVTLDPENKELVNAFRSSYY. 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05446 604 ProSiteProfiles Ankyrin repeat region circular profile. 379 411 - -
Seca2g05446 604 ProSiteProfiles Ankyrin repeat region circular profile. 282 314 - -
Seca2g05446 604 ProSiteProfiles Ankyrin repeat profile. 282 314 IPR002110 GO:0005515
Seca2g05446 604 ProSiteProfiles Ankyrin repeat region circular profile. 347 376 - -
Seca2g05446 604 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 185 599 - -
Seca2g05446 604 ProSiteProfiles Ankyrin repeat profile. 314 346 IPR002110 GO:0005515
Seca2g05446 604 Pfam Ankyrin repeats (many copies) 252 303 IPR002110 GO:0005515
Seca2g05446 604 Pfam Ankyrin repeats (3 copies) 347 410 IPR002110 GO:0005515
Seca2g05446 604 SUPERFAMILY Ankyrin repeat 196 434 IPR036770 -
Seca2g05446 604 Gene3D - 181 314 IPR036770 -
Seca2g05446 604 Gene3D - 315 479 IPR036770 -
Seca2g05446 604 SUPERFAMILY TPR-like 494 600 IPR011990 GO:0005515
Seca2g05446 604 Gene3D Tetratricopeptide repeat domain 492 602 IPR011990 GO:0005515
Seca2g05446 604 SMART tpr_5 528 561 IPR019734 GO:0005515
Seca2g05446 604 SMART tpr_5 562 592 IPR019734 GO:0005515
Seca2g05446 604 SMART tpr_5 494 527 IPR019734 GO:0005515
Seca2g05446 604 ProSiteProfiles Ankyrin repeat profile. 347 379 IPR002110 GO:0005515
Seca2g05446 604 SMART ANK_2a 347 376 IPR002110 GO:0005515
Seca2g05446 604 SMART ANK_2a 412 441 IPR002110 GO:0005515
Seca2g05446 604 SMART ANK_2a 282 311 IPR002110 GO:0005515
Seca2g05446 604 SMART ANK_2a 314 343 IPR002110 GO:0005515
Seca2g05446 604 SMART ANK_2a 379 408 IPR002110 GO:0005515
Seca2g05446 604 SMART ANK_2a 249 278 IPR002110 GO:0005515
Seca2g05446 604 ProSiteProfiles Ankyrin repeat profile. 249 281 IPR002110 GO:0005515
Seca2g05446 604 PRINTS Ankyrin repeat signature 283 298 IPR002110 GO:0005515
Seca2g05446 604 PRINTS Ankyrin repeat signature 330 344 IPR002110 GO:0005515
Seca2g05446 604 ProSiteProfiles Ankyrin repeat profile. 379 411 IPR002110 GO:0005515
Seca2g05446 604 Pfam Protein of unknown function (DUF1685) 70 126 IPR012881 -
Seca2g05446 604 ProSiteProfiles Ankyrin repeat region circular profile. 249 275 - -
Seca2g05446 604 ProSiteProfiles TPR repeat profile. 494 527 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05446 Seca-Chr2 140928887 140943435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05446 286 466 Ion Channels AT2G25600 29.148 2.11e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05446 - - ccaj:109796523 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06266 8 156830211 156831448 Seca2g05446 2 140928887 140943435 PCT