Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05444 ATGGTGGTGAAAGTGAAGAGGGAGACGCTTGAAGCATGCATGACATGCCCTCTTTGCCATAAGCTATTGAGAGATGCTACCACCATATCTCTCTGTCTTCACACGTTTTGCAGGAAGTGCATATATGAGAAGCTTTCAGATGAGGAGGTGGATTGCTGTCCAGTATGCAATATTGATCTGGGCTGCCTTCCAGTGGAAAAACTCAGGCCTGATCACAATTTGCAAGATATTAGGGCCAAAATATTCCCTTTTAAACGAAAAAAGATCAATGCCCAAGAAGTTGTTCCTTCAGTATCCCTGCCAGCAAAAAGGAAGGAAAGGTCACTTTCATCATTGGTGGTTAGTGCTCCCAAAGTTTCAACACATACTAGTTTTACAGGAAAGAGAACAAAAACTGGTACAAGAAAGCCTGCTGCTTTACGTGGATGCAATTTTATCCTTGAAGAAACCATAAAGACAGAGGAAACACATGGTGAAGATGATCTGGATTCTTCCATAGCTGAGCCTTCTAAGAAGCATAGGCCCAATGAAGATACAGAGAATAGTATGGACCTTACAGAAGGGAAGGCTGATCTCTGGACGCCCTTGAACTGTCTTGTTGAAGTAGCCAATAGAACAAAGGCCTCCAGGTCAAATTCACATGGGACCTCTCTTGCCAAATTAGAGTCTCCAACTACTCCTCATGGTGGACAAGAGATGTCTGAAATTATAACCAAATCAGAGCTACCTACTTCTGTCCACAGTGGATTACACATGCCCAAAACCAAAACAAAAAACAAGGATAATGGACATAAAACAAAGGTTGGAGGTGACAAGGATGGAAACACCTTGCCCTCAGGACCAGTGAAGCGAAGAAGGCTGCGTCCTGCTGGTCAGAAAAGAGTAACAGCATTCCAGATGTCTGCCTCAGCCCAAGTCATGTTAGATGCAAAAGGGAGCAAATGCAACCGGAAAAACCGTCCTATTTGGTTTTCATTAGTTGCTTCAGAAGACCGGAAAGGAGATGTTCCCTTGCCACAGATTTCAACATGTTATTTAAGAATAAAGGATGGTACCATGCCCGTGTCATTTATTCAAAAGTACCTTGTGAAGAAACTTAATCTTGCCAGTGAAGCAGAGGTGGAAATAATGTGCCGGGGTCAGCCTGTGCTCCCATCTTTGCAACTGCATAACTTAGTAGATCTGTGGTTCTGTACAGCATCAACCTCAAAAAAGATACCGGCATATAGGAGCTCCTCTGCTAAGGACTTTGTGATGGTTTTATCATATTGTCGAAAAGCCTTACCTCGTTGA 1293 0.4323 MVVKVKRETLEACMTCPLCHKLLRDATTISLCLHTFCRKCIYEKLSDEEVDCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFKRKKINAQEVVPSVSLPAKRKERSLSSLVVSAPKVSTHTSFTGKRTKTGTRKPAALRGCNFILEETIKTEETHGEDDLDSSIAEPSKKHRPNEDTENSMDLTEGKADLWTPLNCLVEVANRTKASRSNSHGTSLAKLESPTTPHGGQEMSEIITKSELPTSVHSGLHMPKTKTKNKDNGHKTKVGGDKDGNTLPSGPVKRRRLRPAGQKRVTAFQMSASAQVMLDAKGSKCNRKNRPIWFSLVASEDRKGDVPLPQISTCYLRIKDGTMPVSFIQKYLVKKLNLASEAEVEIMCRGQPVLPSLQLHNLVDLWFCTASTSKKIPAYRSSSAKDFVMVLSYCRKALPR. 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05444 430 ProSitePatterns Zinc finger RING-type signature. 32 41 IPR017907 -
Seca2g05444 430 MobiDBLite consensus disorder prediction 154 185 - -
Seca2g05444 430 MobiDBLite consensus disorder prediction 254 271 - -
Seca2g05444 430 SMART ring_2 16 56 IPR001841 -
Seca2g05444 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 107 IPR013083 -
Seca2g05444 430 CDD RING-HC_PCGF 14 57 - -
Seca2g05444 430 SUPERFAMILY RING/U-box 9 81 - -
Seca2g05444 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 428 IPR044807 GO:0004842
Seca2g05444 430 Gene3D - 302 409 - -
Seca2g05444 430 MobiDBLite consensus disorder prediction 207 245 - -
Seca2g05444 430 MobiDBLite consensus disorder prediction 207 292 - -
Seca2g05444 430 MobiDBLite consensus disorder prediction 154 187 - -
Seca2g05444 430 ProSiteProfiles Zinc finger RING-type profile. 16 57 IPR001841 -
Seca2g05444 430 Pfam Zinc finger, C3HC4 type (RING finger) 16 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05444 Seca-Chr2 140918668 140924034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05444 1 349 C3H Transcription Factor Family AT2G30580 45.799 6.91e-88 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05444 K16277 - gmx:100783999 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05444 2 140918668 140924034 Seca2g05444 2 140918668 140924034 ECH