Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05441 ATGACAGGTGTAATGGAGGCAGAGCGAGACAAGTACAGTACAATCAATTTTGAACAAACCGAGTTGCGACTCGGCCTTCCTCTGAGTGGAAATGAAGGCGAGCCCGCTCTCAAGAATGCTTCTACTACTTTTACTGGAAAGAGAGGTTTTTCGGACACAGGTGTGGATTTGAAGCTTAATCTTTCCTCAAATATTGTAATAGCCGCCTCTGGCTCTTCCTCTTCCTCATCTATGGCTAAAGACAAGACCACTGCTGCTGCTGGTGCTACCTCTACTGCACCTCCTCCTCTTCGCGCTAACGATCCAGCAAAGCCACCGGCAAAGGCACAAGTAGTAGGTTGGCCACCAGTTCGGTCATTCAGAAAAAACATTGTTAACATTCAAAAGAATACTAATGAAACAGAATTAAAGGCCACCACTACCACTACCGCAGCAACTGCAACAACCAGCGGCAACGCCAACACAGCAGCAGCAGCAGCTTTCGTGAAAGTGAGCATGGACGGTGCACCCTATCTACGCAAAGTGGACTTGAAATTGTACAAGAGCTACCAAGAGCTGTCAGATGCGTTGGCTAAAATGTTCAGTTCCTTCACGGTTGGGAAATGTGGATCCCAAGGCATGAAGGACTTCATGAATGAGAAGAGCAAATTGATAGATCTCCTAAATGGTTCTGATTATGTACCAACCTATGAAGACAAAGATGGAGACTGGATGCTCGTCGGTGACGTACCATGGGAAATGTTCGTCGAATCATGCAAGCGCCTGCGCATAATGAAAGGATCTGAGGCAATCGGGCTGGCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAACCTGA 837 0.4719 MTGVMEAERDKYSTINFEQTELRLGLPLSGNEGEPALKNASTTFTGKRGFSDTGVDLKLNLSSNIVIAASGSSSSSSMAKDKTTAAAGATSTAPPPLRANDPAKPPAKAQVVGWPPVRSFRKNIVNIQKNTNETELKATTTTTAATATTSGNANTAAAAAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTVGKCGSQGMKDFMNEKSKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRT. 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05441 278 MobiDBLite consensus disorder prediction 72 90 - -
Seca2g05441 278 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 265 IPR003311 GO:0005634|GO:0006355
Seca2g05441 278 SUPERFAMILY CAD & PB1 domains 157 259 - -
Seca2g05441 278 Gene3D - 154 272 - -
Seca2g05441 278 MobiDBLite consensus disorder prediction 72 110 - -
Seca2g05441 278 Pfam AUX/IAA family 19 269 IPR033389 -
Seca2g05441 278 FunFam Auxin-responsive protein 154 270 - -
Seca2g05441 278 ProSiteProfiles PB1 domain profile. 159 260 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05441 Seca-Chr2 140889927 140893518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05441 163 263 B3 DNA Binding Superfamily AT3G61830 34.653 9.41e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Seca2g05441 AUX_IAA 4e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05441 K14484 - gmx:100796888 339.347