Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05438 ATGGAAAGGGTTTTCTCAGTGGATGAGATATCGGAGGAGTATTGGTCGGCGGCGAGGGATGAATCATCGTGTAAGTCAAAGTCAAAGATGAATCGAAGCGCTTCGGAATGGGCCTTCCAGCAGTTTCTAAAAGAAGCTTCATCTTGTGGTGTAGCAGCAGAGGCTTGTTCTTCCTCTGTTGATGATGTCAAACTCAAAAAGGATCCAAGTCCAACCACCACAGCCACAGCACCTCTTGATTCTGAAGACTACCAAGCTATTCTCAAGACCAAGCTCAATCTCGCTTGCGCCGCCGTCGCTTTGACTCGGGGAACTTTGGTCAAAACTCAAGATCCTGCCACTCTTCCTGACAGTGGATCACAGGCATCTAATCCTTCTGAAGTTGGGTCTCGGGCTACTTTAAAAGAATCCGGCTCTTCTGAAAATGATCCATCTAAATTACAAAATAAAGATGTCAAAGTACCAGTTGGGGTTCCTTCCATGCAGAGGAAACCTGCTATTGCAGTGAGGTCAACAACAAGTGGATCATCAAAAGAACAGTCAGATGATGAGGAAGCTGAGGGAGAGATTAATATGAGTGGAAACATGAACCCTGCTGATGCAAAACGAGTAAGGAGGATGCTTTCTAATAGGGAGTCTGCCAGACGCTCAAGAAGAAGAAAGCAGGCTCATTTAACTGAGCTTGAGACACAGGTATCTCAATTAAGAGGTGAAAATTCTTCATTGATGAAGCGCTTGACGGATGTGAGCCAGAAATACAATGATGCTGCTGTTGACAACAGAGTATTGAAAGCTGATGTTGAAACATTAAGAGCAAAGGTGAAGATGGCTGAAGAGACTGTCAAAAGAATTACTGGGTTGAACCCAATGTTTAATGCCATGAGTGAGATATCATCAATGGGAATGCCATTATATGATGGAAGCCCTTCTGAGGCATCAGCTGATGCATCTGTTCCTGTACAAGAAGACCCAAATCATCACTTTCGTCAACCAACTTCTAATAATGGTATGTCCAGTCAAGATCTGAGAGTCAACAATGGCATTTCTTCAGTTGAAAATGTGCAGCAGAACAATGCAACAGTGGTAGGTGGGAACAAGATGGGGAGAACAAGTTCCCTGCAGCGGGTGGCTAGCTTGGAACATCTTCAGAAGCGGATTCGCGGTGGTGCAGATTCATGTGGACCTTCTCCTAATGAAGAACAATAA 1206 0.4453 MERVFSVDEISEEYWSAARDESSCKSKSKMNRSASEWAFQQFLKEASSCGVAAEACSSSVDDVKLKKDPSPTTTATAPLDSEDYQAILKTKLNLACAAVALTRGTLVKTQDPATLPDSGSQASNPSEVGSRATLKESGSSENDPSKLQNKDVKVPVGVPSMQRKPAIAVRSTTSGSSKEQSDDEEAEGEINMSGNMNPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRGENSSLMKRLTDVSQKYNDAAVDNRVLKADVETLRAKVKMAEETVKRITGLNPMFNAMSEISSMGMPLYDGSPSEASADASVPVQEDPNHHFRQPTSNNGMSSQDLRVNNGISSVENVQQNNATVVGGNKMGRTSSLQRVASLEHLQKRIRGGADSCGPSPNEEQ. 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05438 401 CDD bZIP_plant_GBF1 203 254 IPR045314 GO:0003700|GO:0006355
Seca2g05438 401 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 205 220 IPR004827 GO:0003700|GO:0006355
Seca2g05438 401 MobiDBLite consensus disorder prediction 107 201 - -
Seca2g05438 401 MobiDBLite consensus disorder prediction 59 79 - -
Seca2g05438 401 SUPERFAMILY Leucine zipper domain 202 252 IPR046347 GO:0003700|GO:0006355
Seca2g05438 401 PANTHER BASIC LEUCINE ZIPPER 63 1 390 - -
Seca2g05438 401 FunFam BZIP transcription factor 200 251 - -
Seca2g05438 401 MobiDBLite consensus disorder prediction 326 341 - -
Seca2g05438 401 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 200 254 IPR004827 GO:0003700|GO:0006355
Seca2g05438 401 Coils Coil 260 280 - -
Seca2g05438 401 MobiDBLite consensus disorder prediction 308 341 - -
Seca2g05438 401 Pfam bZIP transcription factor 201 253 IPR004827 GO:0003700|GO:0006355
Seca2g05438 401 Coils Coil 211 245 - -
Seca2g05438 401 SMART brlzneu 198 262 IPR004827 GO:0003700|GO:0006355
Seca2g05438 401 Pfam Basic leucine-zipper C terminal 269 390 IPR020983 -
Seca2g05438 401 Gene3D - 201 255 - -
Seca2g05438 401 MobiDBLite consensus disorder prediction 107 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05438 Seca-Chr2 140851237 140856224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05438 1 291 bZIP Transcription Factor Family AT4G02640 40.000 6.68e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca2g05438 bZIP_C 2e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05438 K25784 - gmx:778137 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05438 2 140851237 140856224 Seca2g05438 2 140851237 140856224 ECH
Seca8g06278 8 156951007 156954822 Seca2g05438 2 140851237 140856224 PCT