Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05426 ATGGAGAGCAAACAGCACTCTAAAGGCCATATAACTCAAGAATTCTTCAAAGTTTTCATGCAAGAGACATCTCCCCACTTGAGTATACCAAAGTCTTTCAACAAGTTCTTCAATGGAACCACACCATGCAAGGTCACTCTTATGGATCAAGACAGAAATCCTTGGGATATTTGCTTGGAGAAAATCGAGGATCGCTTGGTTTTTAAAAACGGGTGGTGGCAATTTGCCAGGGATAAATGTTTAGAAGAAAGGGACTTTTTGGTTTTTGAGTATGATGGCAAGTCGACGTTTTATGTGAAGATCTTTTCCAAAAGTGGATGCAGGAAAGAAGCTGAAAATCGTGGAAAAGTTGTTCCCATTGTGATTTTGGAAGAAGATTCTGCTCAGAATCGTAGAAAAATCCAGCGGGGTTATAAAAGGAAACATCCACCAACACCCTCCAAAATAAATGACAACAAATCAGATTTAGAGGGTCCATCTCGGATAAAACCAAAAAGAACTTATGAAGAAAATGGTAACCGCGTTGAGAAGAAGGCACTTAGTCCATCACGGAGAAAACCAAAAAGAACTAATGAAGAAAATGGTAATCACGTTGAGAAGAAGGCACTTGGTCCGGCAAAGTGTGTTCCCCCAAAGAACACTCATTTTGAGGTGCATTTTTCCCGCTGGAAACTGAATAAAATGGAAGTTCCTAGAAGAGTACTGAAGCAATTGAACATCAACCTGATATCAAAGATGAGTCTGAGAGATGAGAATAACAAACTGTGGCCGGTGGCTATCAGTAAAAAGCAAGAGGGCCGTCATTTTTTTGCCGACGGGTGGTATGATTTCCGGCAAGCTCACAATATTAAAGAAGGTCACCGTTGTGATTTTCAGTTTGTTATTGGCAAAGGAAATGTGGTCAAAGAATTGCTTGTGCGAGTGCTTCCACCTTCAAAATCAAAATGCCTATAG 954 0.4036 MESKQHSKGHITQEFFKVFMQETSPHLSIPKSFNKFFNGTTPCKVTLMDQDRNPWDICLEKIEDRLVFKNGWWQFARDKCLEERDFLVFEYDGKSTFYVKIFSKSGCRKEAENRGKVVPIVILEEDSAQNRRKIQRGYKRKHPPTPSKINDNKSDLEGPSRIKPKRTYEENGNRVEKKALSPSRRKPKRTNEENGNHVEKKALGPAKCVPPKNTHFEVHFSRWKLNKMEVPRRVLKQLNINLISKMSLRDENNKLWPVAISKKQEGRHFFADGWYDFRQAHNIKEGHRCDFQFVIGKGNVVKELLVRVLPPSKSKCL. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05426 317 MobiDBLite consensus disorder prediction 132 210 - -
Seca2g05426 317 SUPERFAMILY DNA-binding pseudobarrel domain 210 298 IPR015300 -
Seca2g05426 317 PANTHER B3 DOMAIN-CONTAINING 10 194 - -
Seca2g05426 317 CDD B3_DNA 224 299 IPR003340 GO:0003677
Seca2g05426 317 CDD B3_DNA 15 103 IPR003340 GO:0003677
Seca2g05426 317 Gene3D - 8 107 IPR015300 -
Seca2g05426 317 Gene3D - 210 309 IPR015300 -
Seca2g05426 317 ProSiteProfiles B3 DNA-binding domain profile. 213 312 IPR003340 GO:0003677
Seca2g05426 317 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Seca2g05426 317 SMART B3_2 216 312 IPR003340 GO:0003677
Seca2g05426 317 SMART B3_2 15 105 IPR003340 GO:0003677
Seca2g05426 317 Pfam B3 DNA binding domain 222 296 IPR003340 GO:0003677
Seca2g05426 317 Pfam B3 DNA binding domain 15 104 IPR003340 GO:0003677
Seca2g05426 317 SUPERFAMILY DNA-binding pseudobarrel domain 15 107 IPR015300 -
Seca2g05426 317 MobiDBLite consensus disorder prediction 144 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05426 Seca-Chr2 140754375 140757504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05426 14 315 B3 DNA Binding Superfamily AT5G66980 29.882 2.22e-29 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca2g05426 B3 8.8e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05426 - - ccaj:109795839 300.056