Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05423 ATGGGGAAGGCAGGCAAATGGATTAGAAACTTACTTCTAGGGAAAAAAGAAGAGAAATTCAAGAAGATTGATACATTATGCCCTGAGAATAAAACTGCTACCAAAGTGAAGCGCAGATGGAGCTTTGGAAAACTTGCAGGTGGAAGAATAACAGGCAAGGTAGCAGAAAATCATAAATTTTCCAGATCTTTTGACTCCGGTGACTCTGCAAAATTGCAAATCCGAGTCTTGTTGGAAACTAAGAATCCAAGGTATCTTCCAACATCACTTGCAAAGGTTTATGAAGACACTGAATTTGAAACAGCAGCTGCTACAAGGATTCAAGCTGCTTTTCGCTCATATTTGGTAGCAAGGAAAGCATTGCATGCTTTAAGGGGATTAGTCAAGATACAGGCATTGGTCAGGGGTCATCTTGTAAGGAAACAAACAACTGCCACACTGCGTGGCATGCATGCGTTGATGGCTATACAAGTTAGAGCCCGAATTCAGAGAATTCAGATGGTCGAGGAAGCAAATCTCCTCGGAAAACAGCCTCCCCAACATAGAGAAATTCCACACATGAAAGGTCTCATATCAGAAGAAAAACAAGATTCTGAGGATATGAGTCTGAAAGATATGTTAGGGGTTTTGAAAAGTAGAAGTGGCCCTCTAGATGGTTCGCATGTTAAGAGCAGAAAGTATGATTCCATGGCTTTCTATTCGAAGCATCTGTCAAGTTCGAAACGAGAAAATCAACACAAGCAGAACACTTTAGTCACAGCACCAAACAGTCCAGCAAACTACAGGGACATGTCTGAATTTAACCCAACAACAATGGCGTTATCAACTTCTCAGCGCCACCTAGTGCCTCACCGCCAATCATGGTCACCAAATTACATGAACAAGACTGAATCTTCAAGGGCAAAAGCAAGGTCTCGGAGTGAACCAAAACAACGACCCAAACAGGGAATGAAGAACAAAAGCAAGTTTGTAGAATCTCCATTGCATGGTCCAAGGCAAAACCTGTTCTCAAACTCGTCACGGTTCGATCATGGAAGCCTGGACCATTGGGTTATTAATCTTCATGGATCAATGAAGGAAAGCAAGCGTGATTCTTTTGGCAGCAGCACGATGACCAGTGATTCCTGCTACTGA 1134 0.4259 MGKAGKWIRNLLLGKKEEKFKKIDTLCPENKTATKVKRRWSFGKLAGGRITGKVAENHKFSRSFDSGDSAKLQIRVLLETKNPRYLPTSLAKVYEDTEFETAAATRIQAAFRSYLVARKALHALRGLVKIQALVRGHLVRKQTTATLRGMHALMAIQVRARIQRIQMVEEANLLGKQPPQHREIPHMKGLISEEKQDSEDMSLKDMLGVLKSRSGPLDGSHVKSRKYDSMAFYSKHLSSSKRENQHKQNTLVTAPNSPANYRDMSEFNPTTMALSTSQRHLVPHRQSWSPNYMNKTESSRAKARSRSEPKQRPKQGMKNKSKFVESPLHGPRQNLFSNSSRFDHGSLDHWVINLHGSMKESKRDSFGSSTMTSDSCY. 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05423 377 ProSiteProfiles IQ motif profile. 100 129 IPR000048 GO:0005515
Seca2g05423 377 PANTHER IQ-DOMAIN 5-RELATED 1 333 - -
Seca2g05423 377 MobiDBLite consensus disorder prediction 237 261 - -
Seca2g05423 377 MobiDBLite consensus disorder prediction 299 319 - -
Seca2g05423 377 MobiDBLite consensus disorder prediction 275 298 - -
Seca2g05423 377 MobiDBLite consensus disorder prediction 275 340 - -
Seca2g05423 377 Pfam Protein of unknown function (DUF4005) 257 321 IPR025064 -
Seca2g05423 377 Pfam IQ calmodulin-binding motif 101 119 IPR000048 GO:0005515
Seca2g05423 377 Pfam IQ calmodulin-binding motif 128 142 IPR000048 GO:0005515
Seca2g05423 377 Gene3D - 100 155 - -
Seca2g05423 377 SMART iq_5 122 144 IPR000048 GO:0005515
Seca2g05423 377 SMART iq_5 99 121 IPR000048 GO:0005515
Seca2g05423 377 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 143 IPR027417 -
Seca2g05423 377 ProSiteProfiles IQ motif profile. 125 152 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05423 Seca-Chr2 140743510 140746124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05423 1 346 IQD Protein Family AT4G14750 35.955 3.79e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05423 - - gmx:100781320 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05423 2 140743510 140746124 Seca2g05423 2 140743510 140746124 ECH