Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05422 ATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCTCTTCTTGTGAAGCATAAGCATGAGAAGAAAAAGTATGTGCTGAAGAAGATTCGCCTTGCCCGCCAAACTGAGCGCTCTCGTAGGTCTGCACACCAGGAGATGGAGCTAATCTCCAAGTTTAGAAATCCATTTATTGTGGAGTATAAAGATTCATGGGTTGAAAAGGGTTGCTATGTGTGCATTATTATAGGTTATTGTGAGGGTGGAGATATGGCGGAAGCTATAAAGAAAGCTAATGGTGTTATGTTTCCTGAGGAGAAACTGTGTAAGTGGCTTGTTCAACTTCTTATGGCACTTGATTACTTGCACATGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCATGACATACGTCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCAGATGATCTCGCTTCCTCTGTTGTGGGAACACCTAGCTACATGTGCCCAGAACTCCTTGCTGATATACCTTATGGCTCTAAATCAGATATTTGGTCCTTGGGATGTTGTATATATGAAATGACCTCTCATAAGCCTGCGTTCAAAGCATTTGATATACAATCCCTGATTAACAAGATTAATAAGTCCATAGTGGCTCCGTTGCCAACAAAATATTCTGTTGCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCCAGTGCTGCGGAGCTACTTGGGCACCCACATCTTCAACCTCATGTGCTTAAGATCCATCTCAAAATCAATAACCCCAGGCGAAATACATTGCCAGGACATTGGCCAGAATCCGACTACAGGAAGAAAACTAGATTTTTGAAGCCAGAAGGTCATCCTGTTTCTATCTCTGGGGATAAGTGGCACTCTTTCAGCAATGATCGCACTTTAAATCCCAGTGTATCTGGAGCGGAGCAAGATTCTCTATGCTCTACCCTAGAAATAGATTGCACTCCTGAGAATCAAAGATTGGCTGAACTGTGTATTGGAGATAGCCATGACGTGAAGTCAATCCATAAACCAGCTGTTTCCAGAACTTCTAGTATTGCCAAGACTCGAAGACTCACTTCATCAAAAGCTTCTACCACCCCCAAGAAATCAATGGAACCCTCAAAGACCCGTAAGGAGAGTTCATGGTTACAGCTTCCTGTTTCACACAATACCAAACAATCTGTCCCTACAACTCGCAGAGCATCATTGCCATTGCCAAGAAGTTGTGCCATTCAGCAGCCTCCTCGTAGGCCCAGTATCGGTTTACTTGGCCGTGTAAATTCGCCCAATATTTCAGTTAACTCTCCCCGTATTGATAAGATAGCAGAATTCCCATTAGCATCCTATGAAGATCAATTGTTTCCCCTCAATAGATCTTCACCAACCTCTGTGCAGGGTTCCTCAGGCTCCCCTCCTTGTGGCAATGATTCAACTTTGATAGACAAATGCACAGTCAAGGTATGTGACAGAGCCTACATCAGACCTAGTTGTGCAGATGCTTGGCAGGGAATCAAGCGTAGCATGATCAAACAAAATGACGATGGAAAAAGTGGCTCATCTGATCAAAATGCAACTGCTGGAGCATCAAGCAACAACTCCTCAGACTTGCACCGCCGACAGTTTGATACTTCATCATTCCAACAAAGGGCTGAAGCCTTGGAGGGGTTGCTTGAATTTAGTGCAAGATTACTACATCAGGAAAGGTATGATGAACTTGGGGTTTTGTTAAAACCGTTTGGGCCTGGGAAAGCTTCCCCAAGGGAAACAGCTATTTGGTTGAGCAAGAGTTTCAAAGAAAATACTTTCAACCGGGAACAATCTGCCTAA 1875 0.4309 MEQYEILEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKFRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVMFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSHKPAFKAFDIQSLINKINKSIVAPLPTKYSVAFRGLVKSMLRKNPELRPSAAELLGHPHLQPHVLKIHLKINNPRRNTLPGHWPESDYRKKTRFLKPEGHPVSISGDKWHSFSNDRTLNPSVSGAEQDSLCSTLEIDCTPENQRLAELCIGDSHDVKSIHKPAVSRTSSIAKTRRLTSSKASTTPKKSMEPSKTRKESSWLQLPVSHNTKQSVPTTRRASLPLPRSCAIQQPPRRPSIGLLGRVNSPNISVNSPRIDKIAEFPLASYEDQLFPLNRSSPTSVQGSSGSPPCGNDSTLIDKCTVKVCDRAYIRPSCADAWQGIKRSMIKQNDDGKSGSSDQNATAGASSNNSSDLHRRQFDTSSFQQRAEALEGLLEFSARLLHQERYDELGVLLKPFGPGKASPRETAIWLSKSFKENTFNREQSA. 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05422 624 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Seca2g05422 624 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Seca2g05422 624 FunFam Serine/threonine-protein kinase Nek2 84 274 - -
Seca2g05422 624 Gene3D Transferase(Phosphotransferase) domain 1 84 273 - -
Seca2g05422 624 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05422 624 MobiDBLite consensus disorder prediction 529 554 - -
Seca2g05422 624 MobiDBLite consensus disorder prediction 393 417 - -
Seca2g05422 624 MobiDBLite consensus disorder prediction 526 554 - -
Seca2g05422 624 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05422 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Seca2g05422 624 SUPERFAMILY Protein kinase-like (PK-like) 1 259 IPR011009 -
Seca2g05422 624 MobiDBLite consensus disorder prediction 358 418 - -
Seca2g05422 624 CDD STKc_Nek 3 258 - -
Seca2g05422 624 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05422 624 MobiDBLite consensus disorder prediction 360 386 - -
Seca2g05422 624 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Seca2g05422 624 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05422 Seca-Chr2 140738204 140743740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05422 10 259 MAP Kinase Kinase Kinase AT1G53570 31.373 4.70e-36 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Seca2g05422 Pkinase 2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05422 K08857 - gmx:100796019 1050.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05422 2 140738204 140743740 Seca2g05422 2 140738204 140743740 ECH
Seca8g06284 8 157022275 157028043 Seca2g05422 2 140738204 140743740 PCT