Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05421 ATGATGGCCATGAAAACCCTAGGAGAATCCGATGTGGGCATCCTCAGCTACATTTCCAACCTTCCTGGCTTCCGTGGAATTTTAAAGCAAAGGTATTCTGATTTTATTGTGCACGAAGTAGACAAGGATGGAAACACTGTTCAATTGTCCTCACTTGATGCCCCTGCACCTGCAGAAGAGTTGCCAAAGTGCTCATTTCAGAGTGTTCAGGAAAATGAAACAAACGCATCTGACACTACAACTACAATTATAAGTTATGCCTCTCAAATTGAATCTTTTAAGTCTCTTGTTGGGGATTCTGATGCGGCCCGTTTGGAAGAGTTTATTAATCAAATTAATGCTGGTGAAGACAGTGTTTCTCCTATTGTTCTTTCTCCGGATTCGGATAAATCTCATCGAACGGCAGTGCATAATTTCTTCAAGGAAAACTTCAAGTTCCTGGTCACTGACACCACTGACGGACCAGATGCTTTGTCAAAATCCATCCGTGTGAGATTGAATTCTAAAGGCAAAAACTCCAAGAAACGCAAAGAAAGAGATGATAAGCCTTTTGATAGCAGGGGTTCAGAAAATTGGCCAGAAAATGCTGGCAAGTTCCTTAGGTTTCATCTTTATAAGGAGAACAAAGATACCCAGGAAGCTTTGGGGGTGATTGGAAATATGCTTGGAATCCAGTCGAGATCATTTGGATTTGCGGGTACAAAGGATAAACGTGCTGTCTCAACCCAAAGGGTTACTGTTTATAAGCAGCAAGCAAGTAGGCTGGCTTCCCTTAATGAGAGGCTGTTTGGTATTAAAGTTGGTGATTTCTGTTATGTTAAGGAAGGACTTTGTCTTGGCCAGCTCTTGGGAAACCAATTTACAATAACATTGCGAGGTATTGTTGCAGATTCTGAAGATATCATTAAAGCAGCTGCAGATGCCTTAGGAAGGCATGGCTTCATCAACTACTTTGGTTTACAACGCTTCGGAAGTGGTTCTGTGCCAACTCACCTTATTGGAGCTGCATTACTTCGAGGGAAATGGAAACTTGCTGCACGCAAGTACTATAAAGATAGTAATGATGTTGCTGGGACACTTAAGCAGTTGCCTCGATATTTAGTTGCTGAAAGGGCTGTGCTGCAAAGTTTAAAAAAGTCTCCTCAAAACTACTTGCAGGCTTTGAAAACTATTCCACGGACCTTGAGAATGATGTATGTGCATAGTTACCAAAGCTATCTGTGGAACCATGCGGCAAGTACAAGGGTGCAAAAATATGGGACTAAACTAGTATTAGGAGACTTGGTATATTGTAAAGAAAATCCTTCTGGAAAAAATACAGGGCTTGTTGGATCTAAATGTGATGATAACTGCGGTGATAGGCATGATTCTAACAGTGAAGATGAAGTCTCTGGAGATACTGATGAAGAAAGATATGGTGATGTCAAGGTTGTGAATGCTGAAGACCTTAATTCGGGATGTTATACAATTGATGATATCATCCTTCCTATGCCAGGTTCACGGGTAATTTATCCAACCAATGACATTGCCGAAGTTTATCATCATTTGGCAAATAAAGATGGAATCAATTTAACTAAGAACGTGCATAATGTGAAGGAATTCTCAATAACTAGTATGACTGGAAGTTACAGGAGGGTTTTTCAGAAACCAATTAACTTTGAGTGGGAATTACTCACGTATACTGATAGTAATAAACCACTGGTAGAGACAGATTTAGACAAAATTGGCAAGTCTAAACCTAGAAACAATGTCAAACCTTTGGGTGCACCAAATGGGAAAAACGAAGAAGCCATTGATTGCACGAGACAATTAGAGAGCTCTGATGATGGTGCAAAGGAAGTAAAATTGCCACCTGATGAATCTGTCAGTGACCCCAGCTCTCAAGATTCCCATATTGCTCTCAAATTGAGCTTTATTCTTCCTGCTTCATGTTATGCAACAATGGCGATAAGAGAGCTGCTGAAGACTTCAACATCTAGACAATTACCACCAAAGTTGCTTGATTCCTGGACCAACGATGAAGTCCTTGCACTCTTGAGGATCAGATCTACCATGGACAATTGGTTCCCTCAGCTCACTTGGGAACATGTCTCAAGGAAGCTAGCAGAGCTTGGGTTTAAGAAAAGTGCAGAGAAGTGCAAGGAGAGGTTTGAAGATGAAACCGGATATTTCAACAATTTGGGCAAGACTAGTTATCGTTTTGTTAGTGAACTTGAAGAGCTTTATCATCAACAAAACCCTCATCATGATCAAGTTGTTACTGAAAAGACAATGGAAGGAGAAGGAGGAGACAGCATGGGCCACACATTGGAAGAAAATTCCACAGATATTAATAAGATGGTGGTTGAAAAGTCAAGGAAGAGGAAGAGACGTGATAAGTTTGAAATGTTGAAAGGGTTTTGTGAGAGCATTGTGAACAAGATGATGGCTCAACAAGAAGAAATACACAATAAGCTTCTCCATGAGATGCTCAAGAGAGATGAAGAGAAGCTTGCAAGAGAGGAAGCTTGGAAAAAACAAGAGATGGATAAGTTCAACAAAGAGCTTGAGATTATGGCACAAGAACAAGCTATTGTTAGTGATAGGCATGCCACCATCATTCAATTCTTGAACAAATATCTATCATCTTCAACATCAACAACAACTTCTTCCCCTCCCAAGTGCAAAACAAAAGGAAATTCTTCCCCAATATTAACACACTCGCAAAACCCTAATCCTTGTAATTTGGTAAAATTGGGTGGAGAAAACCCTAGGTCAAGTGAGACAACAATATTGTTACAACAAGTTGTTGTTCCTTCTAATTCTTCCAATTCAATTAGCACAATGCAAAAAAACAGTTGTTATGAGAAAGAGGATGTTGGGAGAAGATGGCCAAGAGATGAGGTGTTAGCATTGATAAAGTTGAGGTGTAGTGTGATGAATAGTAATGAAGAGGAGAAGGAGGGAAATAATAATAAGGGACCTCTTTGGGAGAGAATCTCGCAAGGGATGTCAGAGTTGGGATATAAGAGAAGTGCAAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAGTACTTTAGAAAAACCAAAGATAATAAGAAAAGGTCCCTCGACTCTAGGACATGTCCCTACTTCCATCAATTGACCTCTTTGTATAGTCACGAAAAACTATCTCATTCTGATCATCATCATCACTTAAATCCAACCGTCAATTCTGGAGAAGTGCCACCAGATTCAGATCATCAAGCCCAATTACCTGCTGAGTCCTAG 3252 0.4019 MMAMKTLGESDVGILSYISNLPGFRGILKQRYSDFIVHEVDKDGNTVQLSSLDAPAPAEELPKCSFQSVQENETNASDTTTTIISYASQIESFKSLVGDSDAARLEEFINQINAGEDSVSPIVLSPDSDKSHRTAVHNFFKENFKFLVTDTTDGPDALSKSIRVRLNSKGKNSKKRKERDDKPFDSRGSENWPENAGKFLRFHLYKENKDTQEALGVIGNMLGIQSRSFGFAGTKDKRAVSTQRVTVYKQQASRLASLNERLFGIKVGDFCYVKEGLCLGQLLGNQFTITLRGIVADSEDIIKAAADALGRHGFINYFGLQRFGSGSVPTHLIGAALLRGKWKLAARKYYKDSNDVAGTLKQLPRYLVAERAVLQSLKKSPQNYLQALKTIPRTLRMMYVHSYQSYLWNHAASTRVQKYGTKLVLGDLVYCKENPSGKNTGLVGSKCDDNCGDRHDSNSEDEVSGDTDEERYGDVKVVNAEDLNSGCYTIDDIILPMPGSRVIYPTNDIAEVYHHLANKDGINLTKNVHNVKEFSITSMTGSYRRVFQKPINFEWELLTYTDSNKPLVETDLDKIGKSKPRNNVKPLGAPNGKNEEAIDCTRQLESSDDGAKEVKLPPDESVSDPSSQDSHIALKLSFILPASCYATMAIRELLKTSTSRQLPPKLLDSWTNDEVLALLRIRSTMDNWFPQLTWEHVSRKLAELGFKKSAEKCKERFEDETGYFNNLGKTSYRFVSELEELYHQQNPHHDQVVTEKTMEGEGGDSMGHTLEENSTDINKMVVEKSRKRKRRDKFEMLKGFCESIVNKMMAQQEEIHNKLLHEMLKRDEEKLAREEAWKKQEMDKFNKELEIMAQEQAIVSDRHATIIQFLNKYLSSSTSTTTSSPPKCKTKGNSSPILTHSQNPNPCNLVKLGGENPRSSETTILLQQVVVPSNSSNSISTMQKNSCYEKEDVGRRWPRDEVLALIKLRCSVMNSNEEEKEGNNNKGPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDNKKRSLDSRTCPYFHQLTSLYSHEKLSHSDHHHHLNPTVNSGEVPPDSDHQAQLPAES. 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05421 1083 MobiDBLite consensus disorder prediction 1050 1083 - -
Seca2g05421 1083 CDD PseudoU_synth_ScPUS7 199 654 - -
Seca2g05421 1083 Gene3D TruD, catalytic domain 351 658 IPR042214 -
Seca2g05421 1083 MobiDBLite consensus disorder prediction 574 627 - -
Seca2g05421 1083 MobiDBLite consensus disorder prediction 164 190 - -
Seca2g05421 1083 Pfam Myb/SANT-like DNA-binding domain 668 729 IPR044822 -
Seca2g05421 1083 Pfam Myb/SANT-like DNA-binding domain 955 1044 IPR044822 -
Seca2g05421 1083 FunFam Multisubstrate pseudouridine synthase 7 146 350 - -
Seca2g05421 1083 MobiDBLite consensus disorder prediction 173 188 - -
Seca2g05421 1083 MobiDBLite consensus disorder prediction 876 905 - -
Seca2g05421 1083 MobiDBLite consensus disorder prediction 756 779 - -
Seca2g05421 1083 NCBIfam tRNA pseudouridine(13) synthase TruD 179 658 IPR001656 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca2g05421 1083 FunFam Trihelix transcription factor GT-2 957 1022 - -
Seca2g05421 1083 Gene3D - 957 1022 - -
Seca2g05421 1083 Gene3D - 670 726 - -
Seca2g05421 1083 Gene3D - 192 281 - -
Seca2g05421 1083 ProSiteProfiles Myb-like domain profile. 669 721 IPR001005 -
Seca2g05421 1083 MobiDBLite consensus disorder prediction 449 469 - -
Seca2g05421 1083 ProSiteProfiles TRUD domain profile. 313 549 IPR011760 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca2g05421 1083 ProSitePatterns Uncharacterized protein family UPF0024 signature. 233 246 IPR020119 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca2g05421 1083 CDD GT1 955 1024 - -
Seca2g05421 1083 Pfam tRNA pseudouridine synthase D (TruD) 194 554 IPR001656 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca2g05421 1083 ProSiteProfiles Myb-like domain profile. 956 1017 IPR001005 -
Seca2g05421 1083 MobiDBLite consensus disorder prediction 598 619 - -
Seca2g05421 1083 PANTHER TRNA PSEUDOURIDINE SYNTHASE D 3 660 IPR001656 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca2g05421 1083 SUPERFAMILY Pseudouridine synthase 11 656 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca2g05421 1083 FunFam Trihelix transcription factor GT-2 670 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05421 Seca-Chr2 140711099 140727624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05421 670 1048 Trihelix Transcription Factor Family AT5G28300 42.979 1.41e-89 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca2g05421 TruD 3.8e-60 CL0649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05421 K06176 - gmx:100795469 999.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05421 2 140711099 140727624 Seca2g05421 2 140711099 140727624 ECH
Seca8g06288 8 157075722 157078373 Seca2g05421 2 140711099 140727624 PCT