Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05417 ATGGCGGACAAAGCCGTGACCATCCGAACCCGAAAATTCATGACAAACCGTCTTCTCTCCAGAAAGCAATTCATCATTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAGGCTGAGCTTAAGGAAAAGTTGGCTAGAATGTATGAAGTGAAGGACTCTAATACCGTATTTGTCTTCAAATTCCGAACACATTTTGGTGGTGGCAAATCCACTGGTTTTGGTTTGATTTATGATTCAGTTGAGAATGCGAAGAAGTATGAGCCTAAGTACAGGCTTATCAGGAATGGTCTTGACACTAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGGAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGACCAAGGCTTCTGATGCTGCCAAGGCTGGAAAGAAGAAATGA 414 0.4251 MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRANVSKAELKEKLARMYEVKDSNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK. 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05417 137 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
Seca2g05417 137 FunFam 40S ribosomal protein S24 1 137 - -
Seca2g05417 137 Pfam Ribosomal protein S24e 26 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
Seca2g05417 137 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
Seca2g05417 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 131 IPR001976 GO:0003735|GO:0005840|GO:0006412
Seca2g05417 137 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
Seca2g05417 137 Gene3D - 1 132 - -
Seca2g05417 137 MobiDBLite consensus disorder prediction 102 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05417 Seca-Chr2 140688466 140691829 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05417 1 132 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 87.121 3.21e-84 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05417 K02974 - gmx:100802918 238.81