LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g05408	ATGATGGCACCTCTAACCTTTTCTTTATGCTTTTACTGTGTATTGCAGATCATTGACGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAGGCTGAGCTTAAGGAAAAGTTGGCTAGAATGTATGAAGTGAAGGACCCTAATACCGTATTTGTCTTCAAATTCCGAACACATTTTGGTGGTGGCAAATCCACTGGTTTTGGTTTGATTTATGATTCAGTTGAGAATGCGAAGAAGTATGAGCCTAAGTACAGGCTTATCAGGAATGGTCTTGACACTAAGGTAGAAAAGTCAAGGAAGCAAATGAAGGAGAGGAAGAATAGAGCTAAGAAGATTCGTGGAGTAAAGAAGACCAAGGCTTCTGATGCTGCCAAGGCTGGAAAGAAGAAATGA	390	0.4128	MMAPLTFSLCFYCVLQIIDVLHPGRANVSKAELKEKLARMYEVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK.	130

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g05408	129	Gene3D	-	16	124	-	-
	Seca2g05408	129	Hamap	30S ribosomal protein S24e [rps24e].	1	98	IPR001976	GO:0003735\|GO:0005840\|GO:0006412
	Seca2g05408	129	ProSitePatterns	Ribosomal protein S24e signature.	58	80	IPR018098	-
	Seca2g05408	129	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	17	100	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Seca2g05408	129	PANTHER	40S RIBOSOMAL PROTEIN S24	17	123	IPR001976	GO:0003735\|GO:0005840\|GO:0006412
	Seca2g05408	129	Pfam	Ribosomal protein S24e	18	95	IPR001976	GO:0003735\|GO:0005840\|GO:0006412
	Seca2g05408	129	MobiDBLite	consensus disorder prediction	94	129	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g05408	Seca-Chr2	140612137	140614563	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g05408	17	124	Cytoplasmic Ribosomal Protein Gene Family	AT5G28060	87.963	2.33e-68	200

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g05408	K02974		-	gmx:100802918	196.823

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca2g05408	2	140612137	140614563	Seca2g05408	2	140612137	140614563	ECH
	Seca8g06298	8	157227183	157229509	Seca2g05408	2	140612137	140614563	PCT