Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05406 ATGGCATCTGACCAACACGACACCGTTTTCCCCGAAGACATGGACGACGATTACGAATCTCAAGAGGACGAAGAAGAAGACGAAGACGACGACGACGTTTTGCCTGACGACGAAGAAAACGAACCTTCTCCTTCCGCCTCCTCCGCTCTCGCCGTCACCGTCGCCGTTCCCGGTTCCGCCGTCTACAACGGAGGCCACGCTCCAATTTCGACCGCCGCCTCTACCACAATCGTCGTCGCCGACTCCCCCGATCCGAAACGGCAGCGCGTGGAGCCAATTGAAGAGAAAAAGCCTTTGGTCGACGATTCACGGAGGCTATTTCAACGATTGTGGACCGACGAAGACGAGATCGAGCTCTTACAAGGTTTTCTTGACTACACCTCACAAAGAGGATCCTCTCACCACAACGACACCGCTTTGTTCTACGACCAAATCAAGTCCAAGCTCCAACTCGATTTCAACAAAAACCAGCTCGTCGAGAAGATCCGAAGGTTGAAGAAGAAATACCGAAACGTTCTCAACAAAATTGGCTCCGGTAAAGAATTCTCCTTCAAGACCGCTCACGATCAAGCCACCTTCGAAATCTCTCGCAAGATCTGGAGCAACGTGGCACCAATCGGCGGCGACAATAATCCCTTGGACGACGACGAAATCAACCTCAACCCTACACCTAACCCTAACCCTAATTTTAGTCCCTCAGTGAACAAGATCGAGGTCCTGTTCGGGAATGCAACGGAAAAGAAATCACGGAAGCGGTCACGGCCTCAATCGGGGATCAGAAGCAATGAGAAACGCGAGTCAAACGATGGATCCGCGTCTCGTAATTGTATCACCAATGCTGCTACTGTTTCTGCAACTGCAGCTGCAGCTGCAACCCCTACCACTACCCCTATTGCTGCTGCTACCACCACCACTAACGCTAATAATAATGGTTGTAACAGTGGGAATAGCATAGGGGGTTTGATTGAAGAAACGGTGAGGAGTTGTTTGTCGCCGTTTTTGAAGGAATTGGTGGGTGGTGCCATGGGAGGACCATTTGGGGGAAGAGGGTTTTCGTTGAATCCGGTGATGCCGTTGATGAATTTAGGTTTTGGGGGTAAGGATTTGGTGGATGAGAAATGGAGGAAGCAACAGATTTTGGAGTTGGAAGTGTATTCGAAGCGGTTGGAGCTGGTGCAGGATCAGATCAAGGCTGCCATAGAGGAATTGCGGTCAACTGGTGGAGGATGA 1230 0.5081 MASDQHDTVFPEDMDDDYESQEDEEEDEDDDDVLPDDEENEPSPSASSALAVTVAVPGSAVYNGGHAPISTAASTTIVVADSPDPKRQRVEPIEEKKPLVDDSRRLFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKIGSGKEFSFKTAHDQATFEISRKIWSNVAPIGGDNNPLDDDEINLNPTPNPNPNFSPSVNKIEVLFGNATEKKSRKRSRPQSGIRSNEKRESNDGSASRNCITNAATVSATAAAAATPTTTPIAAATTTTNANNNGCNSGNSIGGLIEETVRSCLSPFLKELVGGAMGGPFGGRGFSLNPVMPLMNLGFGGKDLVDEKWRKQQILELEVYSKRLELVQDQIKAAIEELRSTGGG. 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05406 409 Coils Coil 155 175 - -
Seca2g05406 409 PANTHER BNAANNG10740D PROTEIN-RELATED 3 402 IPR007592 GO:0006355
Seca2g05406 409 MobiDBLite consensus disorder prediction 10 39 - -
Seca2g05406 409 MobiDBLite consensus disorder prediction 243 270 - -
Seca2g05406 409 Pfam Protein of unknown function, DUF573 107 201 IPR007592 GO:0006355
Seca2g05406 409 MobiDBLite consensus disorder prediction 207 274 - -
Seca2g05406 409 Coils Coil 382 402 - -
Seca2g05406 409 MobiDBLite consensus disorder prediction 216 238 - -
Seca2g05406 409 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05406 Seca-Chr2 140603646 140604875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05406 1 409 GeBP Transcription Factor Family AT5G28040 44.946 3.49e-98 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Seca2g05406 DUF573 1.8e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05406 - - gmx:100779712 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06302 8 157271996 157273183 Seca2g05406 2 140603646 140604875 PCT