Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05399 ATGGCTCGATCACCTCCCTCTCTAATTACATTTAAAGTGTGGAGGAGCCAACCCGAGCTAGTGGCTCCTGCTATACCCACCCCTCACGAAGTTAAACTATTATCTGACATTGATGATCAAGAAGGCCTGCGTTTCCAAATCCCATTCATACAAGTGTATCGTCATGAACCATCCATGACAGGAAAAGACCCTGTTCAAGTCCTTAAAAAGGCACTGGCACAAACACTTGTTTTCTATTACCCCTTTGCGGGCAGACTTAAGGAGGGACCAAACCGCAAATTGATGGTGGATTGTACTGGGGAGGGCGTCATGTTCATTGAAGCTGATGCAGATGTAACACTCCATCAATTCGGTGATGCTCTTCAACCTCCATTCCCATGCTTCCAAGAACTCTTATATGACGTTCCAGGTTCAGAACACGTTATCAACTGTCCCCTACTACTCATACAGGTCACACGTCTTAAGTGTGGTGGTTTTATCGTGGCCACCCGCATAAACCACACCATGAGCGACGGAGCTGGTATTAAACAGTTCATGAACGCATGGACCGGAATGGCTCGAGGTGCACGCCAACCTTCCATTTTACCTGTGTGGCATAGGGAGCTTCTGATGGCAAGAGATCCACCGCGCATTACATACAACCATCGCGAATACGAGCAAGTGACCGATAACACCCTCAAGGAAGGGACCATCATGGTTGATCGATCTTTCTTTTTTGGACCCTCTGAGATAGTTGCACTTCGTCGCTTAGTTCCTTTTCATCTTCGTGAACGGAGTACCACATTTGATATTGTCACTGCATGCTTGTGGTGTTGTCGCACAAAAGCATTGCAGCTAAAGGAAGAGGAAGAGGTTCGCATGATGTGCATCGTCAATTCACGTGCCAGGTTTAACCCTCCATTACCCGTTGGTTATTATGGCAACGGTTGTGTGTTCCCCGCAGCGGTTACAACTGTTGGAAAACTTTGTGGCAACCCATTTGGCTATGCCGTGGAGTTAATAAGGAAAGTAAAAGATGAGGTTACCGAGGAGTATGTGCATTCTGTGGCAGATTTTATGGTGTTGAAGGGACGATGTTTATTTACAACGGTGAGGTCTTGCATTGTGTCAGATTTGACACGTGCTAGATTCAGAGAAGTGGACTTTGGGTGGGGCAATGCAATATATGGTGGCGTGGCCAAAGGTGGGGCCGGACCCTTCCCTGGAGCAACCTTTCTCACACCGTCTAAGAATGCAAAAGTTACATTTAAAGTGTGGAGGTGCCAACCGGAGCTAGTGGCTCCTGCTATACCCACCCCTCACGAAGTTAAACTATTATCTGATATTGATGATCAAGAAGGCCTGCGTTTCCAAATCCCATTCGTACAAGTGTATCGTCATCAACCATCCATGGCAGGGAAAGACCCTGTTCAAGTCCTTAAAAATGCACTGGCACAAACACTTGTTTTCTATTACCCCTTCGCGGGTAGACTTAGGGAGGGACCTAACCGCAAATTGATGGTGGATTGTACTGGGGAGGGCGTCATGTTCATTGAAGCTGATGCAGATGTAACACTCCATCAATTCGGTGGTGATGCTCTTCAACCTCCATTCCCATGCTTCCAAGAACTTTTATATGACGTCACACGTCTTAAGTGTGGTGGTTTTTTCGTGGCCACTCGCTTAAACCACACCATGAGCGACGGAACAGGTATAAAACAATTCATGAACCCCTGGGCCGAAATGGCTCAAGGTGCAGACCAACCTTCCATTTTACCTGTGTGGCATAGGGAGCTTCTGATGGCAAAAGATCCACCGCGCATTACATGCAACCATCGCGAATACGAGCAAGTGACCGATAACACCCTCGACGAAGGGACCATCATGGTTGATCGATCTTTCTTCTTTGGACCCTCTGAGATAGCTACACTTCGTCACTTGCTTCCCTTTCACCTTCGTGAACGCAGTACCACATTTGATATTATCACCGCATGCTTGTGGTGCTGTCGCACAAAAGCATTGCGGCTAAAGCCAGAAGAAAAGGTTCTCATGATGTGCATCATCAATTCACCTGTCAGGTTTAACCCTCCATTACCCGTTGGTTATTATGGCAACGGTTTTGTGTTTCCTGCGGCGGTCACAACTGCCGGAAAACTTTGTGGAAACTCATTTGGCTATGTCGTGGAGTTAATAAGGAAAGTAAAAGTTGAGGTCACCGAGGAGTATGTGCATTCTGTGGCAGATTTTATGGTATTGAAGGGACGATGTTTATTTACAACGGTGAGATCTTGCATTGTGTCTGATTTGACACGTGCTAGATTCAAAGAAGTGGACTTTGGGTGGGGCAATGCAATATATGGTGGCGTGGCCAAAGGTGGGGCTGGACCCTTCCCTGGAGCAACCTATCTTATACCGTCTAGGAATGCGAAGGGAGAGGAAGGTATTGTAGTGCCAATTTGCTTGCCCATCGAGGTTATGAAGAGGTTTGCTAAAGAGTTGGATGACATGATAGGGAACAAAGATCAACCCAAGCTCCGTTTGGTTTATAATTGA 2532 0.468 MARSPPSLITFKVWRSQPELVAPAIPTPHEVKLLSDIDDQEGLRFQIPFIQVYRHEPSMTGKDPVQVLKKALAQTLVFYYPFAGRLKEGPNRKLMVDCTGEGVMFIEADADVTLHQFGDALQPPFPCFQELLYDVPGSEHVINCPLLLIQVTRLKCGGFIVATRINHTMSDGAGIKQFMNAWTGMARGARQPSILPVWHRELLMARDPPRITYNHREYEQVTDNTLKEGTIMVDRSFFFGPSEIVALRRLVPFHLRERSTTFDIVTACLWCCRTKALQLKEEEEVRMMCIVNSRARFNPPLPVGYYGNGCVFPAAVTTVGKLCGNPFGYAVELIRKVKDEVTEEYVHSVADFMVLKGRCLFTTVRSCIVSDLTRARFREVDFGWGNAIYGGVAKGGAGPFPGATFLTPSKNAKVTFKVWRCQPELVAPAIPTPHEVKLLSDIDDQEGLRFQIPFVQVYRHQPSMAGKDPVQVLKNALAQTLVFYYPFAGRLREGPNRKLMVDCTGEGVMFIEADADVTLHQFGGDALQPPFPCFQELLYDVTRLKCGGFFVATRLNHTMSDGTGIKQFMNPWAEMAQGADQPSILPVWHRELLMAKDPPRITCNHREYEQVTDNTLDEGTIMVDRSFFFGPSEIATLRHLLPFHLRERSTTFDIITACLWCCRTKALRLKPEEKVLMMCIINSPVRFNPPLPVGYYGNGFVFPAAVTTAGKLCGNSFGYVVELIRKVKVEVTEEYVHSVADFMVLKGRCLFTTVRSCIVSDLTRARFKEVDFGWGNAIYGGVAKGGAGPFPGATYLIPSRNAKGEEGIVVPICLPIEVMKRFAKELDDMIGNKDQPKLRLVYN. 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05399 843 Gene3D - 216 425 IPR023213 -
Seca2g05399 843 Gene3D - 11 215 IPR023213 -
Seca2g05399 843 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 19 390 - -
Seca2g05399 843 Gene3D - 614 826 IPR023213 -
Seca2g05399 843 Pfam Transferase family 421 828 - -
Seca2g05399 843 Pfam Transferase family 16 419 - -
Seca2g05399 843 Gene3D - 426 613 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05399 Seca-Chr2 140558351 140566102 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05399 403 826 Monolignol Biosynthesis Gene Families AT5G48930 26.915 2.19e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05399 K19861 - gmx:100792864 640.958