LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g05385	ATGGGATGTGTGATTAGCCGCGAAGCTTCGTCGGGAGTAATCTCAGAAGCGAAGGAGGAGAAGAGGTTAGGTAGTGAGTGTGACAGGAAGGTTGATGGAGTCTCGGGGAAGGAAACGGTGGTAGAGGTTCAGAATGGTGGGAACGAGAAGAAGGAGAAGGTAAAGGAAAACGGTGGTGGCGGTGATGGGGTTCACCGGCCACGGGGAGAAAGAAGAAGATCAAAGGGGAACCCAAGGCTAAGTAATCCGCCCAAGCATTTGCGTGGGGAGCAGGTTGCAGCTGGATGGCCACCCTGGCTCACTGCAGTTTGTGGGGAAGCACTCAATGGTTGGATTCCGCGAAAGGCTGACACCTTTGAGAAAATTGATAAGATTGGGCAAGGAACTTATAGTAATGTGTACAAAGCTAAAGACACTTTGACCGGTAAAATTGTTGCTCTAAAAAAGGTTCGGTTTGACAATTTGGAACCTGAGAGCGTAAAATTCATGGCTAGAGAGATTCTTATTTTGCGGAGGTTGGATCATCCCAATGTTGTAAAGTTGCAAGGTTTAGTTACATCAAGGATGTCCTGTAGTTTGTATTTGGTGTTCGATTACATGGAGCATGATTTAGCTGGACTTGCTGCAAGCCCAGGAATCAGGTTCACTGAGCCTCAGGTAAAATGTTACATGCATCAGCTGCTATCAGGACTTGAGCACTGTCATAACCGTCATGTACTTCACCGGGATATTAAAGGATCAAATCTTCTTATTGATAATGAAGGAATACTTAAGATTGCTGACTTTGGACTGGCATCTGTGTTTGATCCAAACCATAAGCATCCCATGACTAGTCGTGTAGTAACCCTTTGGTATCGGCCTCCTGAATTGCTTCTTGGCGCCACAGATTATGGGGTGGGCATAGACCTTTGGAGTGCTGGATGTATTTTAGGGGAGTTATTGGCTGGGAAGCCAATTATGCCTGGTCGTACAGAGGTAACAACTTACATATCTTGTTGGTTTATTATAGGATTTTTCATTTCCCTGATTTTTTTGTGTCACAGGCATTTAATTTTTTTTTACTCTTTGCTTACGCAGGTGGAACAACTGCATAAGATATACAAACTATGTGGTTCACCTTCTGATGAGTATTGGAAGAAGTCAAAGTTTCCTAATGCTACCTTGTTTAAGCCTCGAGAGCCATACAAGAGATGTATAAGAGAGACATTTAAAGATTTTCCACCCTCTGCTCTAACCCTTATTGATACACTTCTTGCAATTGATCCTGTAGAACGGAAAACTGCCTCAGATGCTTTAAGAAGTGAGTTCTTTACTACAGAACCTTATGCTTGCGATCCTTCTAGTCTTCCAAAATATCCCCCAAGCAAAGAAATGGACGCTAGACGACGGGATGATGAAGTGAGGAGAATGTTCAGACAAAGAGCTGCAGGCAAAGCTCAGGTTGATGGCCCGAAGAAGCATCGGACACGTGATCGTGCTGCGAAAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCCAATATTGATAGAAGACGTCTAATCACTCATGCAAATGCTAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATCAAGATGGACAACTTGGCGTTCCTTTGGGATCTTCACATCATATAGATCCGGATACTGTTCCTATCGATGTCTCTTTCACTTCAACCTCATATACTTATTCAAAGGAGCCATTCCAAGCTTGGTCAGGTCCTATTGGTAATGCTGCTGACATTGGAGTGCCGAAGCGGAAGAAACACGCTGCAGGTGATGCGTTGGATTTATCAAAACCACATAAAGGTACCCTCAAGGATAAGGTTAAAGGAAAGAAAATCACAGCTTAG	1857	0.441	MGCVISREASSGVISEAKEEKRLGSECDRKVDGVSGKETVVEVQNGGNEKKEKVKENGGGGDGVHRPRGERRRSKGNPRLSNPPKHLRGEQVAAGWPPWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMEHDLAGLAASPGIRFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDNEGILKIADFGLASVFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGIDLWSAGCILGELLAGKPIMPGRTEVTTYISCWFIIGFFISLIFLCHRHLIFFYSLLTQVEQLHKIYKLCGSPSDEYWKKSKFPNATLFKPREPYKRCIRETFKDFPPSALTLIDTLLAIDPVERKTASDALRSEFFTTEPYACDPSSLPKYPPSKEMDARRRDDEVRRMFRQRAAGKAQVDGPKKHRTRDRAAKAFPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGQLGVPLGSSHHIDPDTVPIDVSFTSTSYTYSKEPFQAWSGPIGNAADIGVPKRKKHAAGDALDLSKPHKGTLKDKVKGKKITA.	619

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g05385	618	MobiDBLite	consensus disorder prediction	44	77	-	-
	Seca2g05385	618	MobiDBLite	consensus disorder prediction	584	618	-	-
	Seca2g05385	618	PANTHER	CELL DIVISION PROTEIN KINASE	117	441	-	-
	Seca2g05385	618	MobiDBLite	consensus disorder prediction	473	494	-	-
	Seca2g05385	618	FunFam	Mitogen-activated protein kinase	200	342	-	-
	Seca2g05385	618	SMART	serkin_6	119	437	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca2g05385	618	ProSitePatterns	Protein kinases ATP-binding region signature.	125	148	IPR017441	GO:0005524
	Seca2g05385	618	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	239	251	IPR008271	GO:0004672\|GO:0006468
	Seca2g05385	618	ProSiteProfiles	Protein kinase domain profile.	119	437	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca2g05385	618	SUPERFAMILY	Protein kinase-like (PK-like)	113	444	IPR011009	-
	Seca2g05385	618	MobiDBLite	consensus disorder prediction	19	91	-	-
	Seca2g05385	618	Pfam	Protein kinase domain	119	437	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca2g05385	618	FunFam	probable serine/threonine-protein kinase At1g54610	106	201	-	-
	Seca2g05385	618	Gene3D	Transferase(Phosphotransferase) domain 1	202	476	-	-
	Seca2g05385	618	MobiDBLite	consensus disorder prediction	575	618	-	-
	Seca2g05385	618	CDD	STKc_CDK9_like	119	437	-	-
	Seca2g05385	618	MobiDBLite	consensus disorder prediction	19	36	-	-
	Seca2g05385	618	Gene3D	Phosphorylase Kinase; domain 1	106	201	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g05385	Seca-Chr2	140408165	140414120	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g05385	111	490	Core Cell Cycle Gene Families	AT5G10270	46.717	8.02e-114	348

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Seca2g05385		Pkinase	2.9e-63	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g05385	K08819		-	gmx:100786837	1024.23