Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05380 ATGGGCGCGCCGAAGAAAAGCGCCGCTAGGGTTTCGGAGGACCCCGACGAATTGGTGCGGGTTCCTTTGCAGGCCATCCTTTTGGCGGATAGTTTCACCACCAAATTCAGACCTATCACGCTCGAACGTCCTAAAGTGCTGTTGCCATTAGTGAATGTTCCCATGATAGATTACACCTTGACTTGGCTCGAATCTGCTGGTGTCGAAGAAGTTTTTGTTTTCTGCTGTTCTCATGCCAAGCGGGTGATTAGCTATTTGGAGAAATCTGAGTGGTTATCTCAACCAAATTTTACTGTAACTACTATAGAGTCACAGAATTCTGTGAGCGCTGGAGATGCTCTGCGTGTAATATATGAGCGCAATGTGATACAAGGAGACTTTGTCCTCATCAGTGGAGACACTATAAGCAATATGTCGCTTACTGAGGCACTTCTAGAACATAAAGAAAGGAAGAAGAAAGATAGTAACGCTGTATTGACAATGGTCATCAAGCGGTCAAAACCTAATCCAGCTATCCATCAGTCTCGACTTGGTACTGATGAAATTTTCATGGCCATTGATCCTAATACTAAGCAACTTTTGTATTATGAGGATAAGGCAGACTATTCTAAAGGCATTCTACATCTTGACAAGTCATTGCTTGTTGACAATCCTTCTCTCTCTCTGCACCATGACAAGCAGGATTGTTACATTGACATTTGCTCGCCAGAAGTCCTTAGCCTATTTACCGACAATTTTGACTACCAACATCTACGGCGTCATTTTGTAAAGGGATTGCTTCTTGATGATATAATGGGGTACAAGATTTTTGTTCATGAAATCCACTCAAACTATGCTGCAAGGATTGATAATTTCAGAAGCTATGACACTGTCAGCAAGGATATAATTCATAGATGGACATATCCATTGGTACCAGATGTTATGAATTTTGGCAACACAGCTACTAAACTTGAACGAAAAGGAATATATCGTGCTTCGGAAATATCGCAATCACAATCTGCTGTTATTGGCCCATTCACTGTTATAGGATCTAGCACCAAAATTGGGAATGACACTAAAATTTCAAATTCTGTTATTGGAGAAGGGTGTAAAATTGGGTCAAATGTACATATAGAGGGGTGCTATATATGGGACAACATTACCATAGAAGATGGCTGTAAACTTAGGCATGCAATTGTATGTGATGGGGTTACCATGAAGTCAGGAGCTGTTCTGGAACCTGGTGTTGTTTTGTCTTTCAAGGTTGTAGTTGGGCAGGAGTTCATTGTTCCTCCTTATTCAAAAGTGTCTCTACTACAGCAGCCAATTGAGGAAGATAGTGATGAGGAGCTTGAATATGCTGATAGTGCTAGTGCCATCACCAGCACTGCGGATAAGTCCGATGTAGAGATTGCTTCCCAAGCATTGGAGACACATTTTAGCACAGCATCGGAGCTAGGTATGGGTGGGGCTGGTTATGTATGGCCAAAATGCGAAGGTGGCCATGAAGAAGAATGGAGGCAATCGGTGGCGCCTATCACTGCAGATAAAATTTTGGAGGCAATAAAAGCTATGGAAGATGATCTGGAGTTAACTCATGATGGCAGTATTCTCCCACCTTCTGGGGAGCTGCAACCTAATTCTAATGATTCAGACGATGATGTTAATGATGATTCTAGAGATGACAATTATTCCTTTGAGGAAGAGGTTGAAGCAACATTTCTCAGGGCTGTTGATGAAAACATACAAGATGACAATTTGATCTTAGAAGTCAACTCTTTGAAGTTGTCATACAATAAGATAACTGCTGATTGTGCTGGAGCTGTATTTTATGCAATGATGAAGTATGCTTTGAACATACCCCATAGTTCAGCTGGTGAGTTTTCATCCCTTCTCTCTATTGCCACCTGA 1890 0.4169 MGAPKKSAARVSEDPDELVRVPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMIDYTLTWLESAGVEEVFVFCCSHAKRVISYLEKSEWLSQPNFTVTTIESQNSVSAGDALRVIYERNVIQGDFVLISGDTISNMSLTEALLEHKERKKKDSNAVLTMVIKRSKPNPAIHQSRLGTDEIFMAIDPNTKQLLYYEDKADYSKGILHLDKSLLVDNPSLSLHHDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFVHEIHSNYAARIDNFRSYDTVSKDIIHRWTYPLVPDVMNFGNTATKLERKGIYRASEISQSQSAVIGPFTVIGSSTKIGNDTKISNSVIGEGCKIGSNVHIEGCYIWDNITIEDGCKLRHAIVCDGVTMKSGAVLEPGVVLSFKVVVGQEFIVPPYSKVSLLQQPIEEDSDEELEYADSASAITSTADKSDVEIASQALETHFSTASELGMGGAGYVWPKCEGGHEEEWRQSVAPITADKILEAIKAMEDDLELTHDGSILPPSGELQPNSNDSDDDVNDDSRDDNYSFEEEVEATFLRAVDENIQDDNLILEVNSLKLSYNKITADCAGAVFYAMMKYALNIPHSSAGEFSSLLSIAT. 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05380 629 Gene3D Hexapeptide repeat proteins 318 458 - -
Seca2g05380 629 FunFam Translation initiation factor eIF-2B subunit epsilon 12 303 - -
Seca2g05380 629 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 14 303 IPR029044 -
Seca2g05380 629 CDD eIF-2B_epsilon_N 23 239 IPR035543 -
Seca2g05380 629 SUPERFAMILY Trimeric LpxA-like enzymes 267 429 IPR011004 -
Seca2g05380 629 MobiDBLite consensus disorder prediction 525 555 - -
Seca2g05380 629 SUPERFAMILY ARM repeat 559 619 IPR016024 -
Seca2g05380 629 FunFam Trimeric LpxA-like enzyme 316 449 - -
Seca2g05380 629 CDD W2_eIF2B_epsilon 558 623 IPR044123 GO:0005085|GO:0031369
Seca2g05380 629 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 8 620 - -
Seca2g05380 629 SUPERFAMILY Nucleotide-diphospho-sugar transferases 21 369 IPR029044 -
Seca2g05380 629 Pfam Nucleotidyl transferase 25 166 IPR005835 GO:0009058
Seca2g05380 629 CDD LbH_eIF2B_epsilon 341 419 - -
Seca2g05380 629 Gene3D - 547 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05380 Seca-Chr2 140369128 140376210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05380 1 621 Eukaryotic Initiation Factors Gene Family AT2G34970 64.013 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05380 K03240 - gmx:100784894 1075.08