Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05351 ATGTGTTTGCCCGAGGCAGAGAGAGAAAGGGAAAGAACCATGGCACTTGAAGCTGTAGTTTATCCACAACCACAAGACCCATTTGGTTATGCAATCAAAGAACTCTTCAACTTCAACAAAGATGAAGGACCCAATTGGGACTTCAACCTTGAAAATGATGAGCAAACAGGTTCTTCTATCTGCACTTTTCTAGAGAACCAAACAGATCACAATTACCCTTATGGTGGAGATTGGAATTGTTCTCCACAACCATCAATGTTACCACCACAAATGAATGAACTTCATGCCCCTAATCTATCTTCAGAGCCTCACAACTTAGATACCTCAACTTCACGTCCCAAGAGACGCAGAGCCAAAAGCAGAAAGAATAAGGAAGAAATTGAGAACCAGAGAATGACTCACATTGCTGTTGAGCGCAACAGAAGAAAGCAAATGAATGAGTATCTCTCTGTTCTTCGCTCTCTAATGCCTGACTCTTATGTTCAAAGGGGTGATCAAGCATCTATAATTGGGGGTGCTATTAACTTTGTTAAGGAGCTTGAACAGAGGCTACAATTTCTTGGTGTTCAGAAAGAAAAAGAAGGGAAATCTGATATAATTGCAAATTCAAGCATGCCCTTTTCTGAGTTTTTCACTTTTCCACAATACTCAACAAGTGCTAGTGGATGTGATAATAATAACAATAATTGTGCAGCCATGGGTGAGGTTCAATCTAGCATTGCTGACATTGAAGTGACAATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCCAAGAAAAGGCCAAAACAGCTCTTGAAGATGGTGTCTAGTTTGCATGGCATGCGTCTCACAATCTTGCACCTAAATGTCACTACCACAGGGGAAATTGTCCTTTATTCTCTCAGTGTTAAGGTGGAAGATGATTGCAAGCTTGGATCAGTGGATGAGATAGCAACAGCTGTATACCAAATGCTGGATAGGATTCAACAAGAGTCAATGTTGAATTAA 990 0.404 MCLPEAERERERTMALEAVVYPQPQDPFGYAIKELFNFNKDEGPNWDFNLENDEQTGSSICTFLENQTDHNYPYGGDWNCSPQPSMLPPQMNELHAPNLSSEPHNLDTSTSRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQFLGVQKEKEGKSDIIANSSMPFSEFFTFPQYSTSASGCDNNNNNCAAMGEVQSSIADIEVTMVESHANLKIRSKKRPKQLLKMVSSLHGMRLTILHLNVTTTGEIVLYSLSVKVEDDCKLGSVDEIATAVYQMLDRIQQESMLN. 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05351 329 SMART finulus 135 186 IPR011598 GO:0046983
Seca2g05351 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 180 IPR011598 GO:0046983
Seca2g05351 329 MobiDBLite consensus disorder prediction 83 107 - -
Seca2g05351 329 Pfam Helix-loop-helix DNA-binding domain 130 181 IPR011598 GO:0046983
Seca2g05351 329 Gene3D - 114 195 IPR036638 GO:0046983
Seca2g05351 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 192 IPR036638 GO:0046983
Seca2g05351 329 MobiDBLite consensus disorder prediction 81 125 - -
Seca2g05351 329 PANTHER MAX DIMERIZATION, MAD 74 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05351 Seca-Chr2 140017828 140019950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05351 14 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.852 8.36e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca2g05351 HLH 4.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05351 - - pvu:PHAVU_007G181900g 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05351 2 140017828 140019950 Seca2g05351 2 140017828 140019950 ECH
Seca8g06352 8 157782658 157784444 Seca2g05351 2 140017828 140019950 PCT