Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05349 ATGAAAAACGATCCAACCAATTCCCACCTATTCTTCTTCCTCCTCATCCTCCCTCTCGCCGCCGCACAAACCCAAAACAATGGCTATTCCGACCAAAATCTCAGCCAATTCAACCCTTCTTTTGCCATAATCATAGTCATATTAGTTGCCGCTCTTTTCCTCATGGGCTTTTTCTCCATCTACATCCGCCAGTGCGCTGATTCTCCCTCCAACAGCGTTCTCCCCCTCACCCACGCGCGTTCAAGGAGAGCAGCGCGTGGACTTGACGCAGCAGTCATCGAAACGTTCCCGATTCTAGAATATTCCGAGGTTAAGATGCACAAGATTGGAAAAGAAGCATTAGAATGCGCCGTTTGCTTATGCGAATTCGAGGACACCGAAACGCTGCGTTTGATCCCAAAGTGCGATCACGTTTTCCACCCTGAGTGCATCGACGAGTGGTTAGGTTCTCACACAACCTGCCCCGTTTGCCGTGCCAACCTCGTTCCCCAACCTGGCGAGTCCGTTCCTGGTGAGTCACTAGACGCCGAAGCTCGAAACGACGCCGTTTCTGGCCAAACGACAACAGAACAGCCAAACGCGGATGTTGACCGAGTCTTACCTGAGCCTGAAGTGATTCCCCTGGATAAAACTTTGAACCGAAACCGCACACGTGGTTCCCGGTCGAACCGGACGCGTCGTTTTCCGCGGTCCCACTCGACCGGTCATTCGTTGATCCAACCGGGTGAAAACACCGCACGGTTCACTTTGAGACTACCCTTGGAAGTGAGGAAACAGGTAATGAACCGGCAATTGCAACGTGCTAGCAGCTTGATTGTGTTGCCTAGAGAAAGTAGTTCAAGGCAGGGTTACCGAACCGGCGGCGAGGGAAGTAGTAGAGGAAGGTTGAGACGATTGGACCGGAGTTTTAAATCAGACCGGTGGGTTTTCAATCGGAGTTTTAAATCAGACCGGTGGGTTTTTACGATGGCTCCACCATTCTTAGTTAGGGCATCGTCGATTAAGACCCCGAAGGTGGGTAATGGTGACGGTGAAGGAACCTCTTCCAGCTCCACCGCTCCTATTATGCCGCCGTCAGCCGTTGACTCAGCCCGCCCTCCGGTTTGA 1107 0.523 MKNDPTNSHLFFFLLILPLAAAQTQNNGYSDQNLSQFNPSFAIIIVILVAALFLMGFFSIYIRQCADSPSNSVLPLTHARSRRAARGLDAAVIETFPILEYSEVKMHKIGKEALECAVCLCEFEDTETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRANLVPQPGESVPGESLDAEARNDAVSGQTTTEQPNADVDRVLPEPEVIPLDKTLNRNRTRGSRSNRTRRFPRSHSTGHSLIQPGENTARFTLRLPLEVRKQVMNRQLQRASSLIVLPRESSSRQGYRTGGEGSSRGRLRRLDRSFKSDRWVFNRSFKSDRWVFTMAPPFLVRASSIKTPKVGNGDGEGTSSSSTAPIMPPSAVDSARPPV. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05349 368 FunFam E3 ubiquitin-protein ligase ATL6 76 164 - -
Seca2g05349 368 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Seca2g05349 368 MobiDBLite consensus disorder prediction 168 196 - -
Seca2g05349 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 163 IPR013083 -
Seca2g05349 368 MobiDBLite consensus disorder prediction 217 231 - -
Seca2g05349 368 MobiDBLite consensus disorder prediction 342 357 - -
Seca2g05349 368 SUPERFAMILY RING/U-box 115 165 - -
Seca2g05349 368 MobiDBLite consensus disorder prediction 180 194 - -
Seca2g05349 368 MobiDBLite consensus disorder prediction 213 240 - -
Seca2g05349 368 MobiDBLite consensus disorder prediction 334 368 - -
Seca2g05349 368 PANTHER RING FINGER DOMAIN-CONTAINING 25 167 - -
Seca2g05349 368 CDD RING-H2_EL5-like 115 158 - -
Seca2g05349 368 SMART ring_2 116 157 IPR001841 -
Seca2g05349 368 Pfam Ring finger domain 115 158 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05349 Seca-Chr2 139975819 139976925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05349 11 340 Rapid Response to Elicitors AT3G05200 46.628 1.00e-87 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05349 K10664 - gmx:100781706 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05349 2 139975819 139976925 Seca2g05349 2 139975819 139976925 ECH
Seca8g06355 8 157833129 157834256 Seca2g05349 2 139975819 139976925 PCT