Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05342 ATGGATCATCAAGGGCATAACCAGAACCCTTCTATGGGGGTTGTTGGTAGTGGAGCTCAACTAACATATGGTTCTAACCCATATCAGCCAGGCCAAATAACTGGGGCACCAGGATCTGTTGTTACATCAGTTGGGGCCATTCAAACCTCTGGCCAACCCGCTGGAGCTCAGCTGGGACAGCATCAACTCGCATATCAGCATATTCATCAGCAACAACAGCAGCAACTTCAGCAACAGCTGCAGGCCTTTTGGGCAAATCAATACCAAGAAATTGAGAAGGTTACTGATTTCAAGAACCACAGTCTTCCCCTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTAGGATGATATCAGCTGAGGCACCAGTCATATTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTAACCCTGCGCTCCTGGAATCACACTGAAGAGAACAAAAGGAGAACACTTCAAAAAAATGACATTGCTGCAGCAATCACAAGAACTGATATCTTTGATTTCTTGGTTGACATTGTGCCTCGTGAGGACTTGAAAGATGAAGTGCTGGCATCAATCCCAAGAGGAACAATGCCTGTTGCAGGGCCTGCTGATGCTCTTCCTTATTGCTATATGCCTCCTCAGCATGCCCCCCCAGTTGGAACTGCTGGCGTCATAATGGGTAAGCCTGTGATGGACCCAAATATGTATGCCCAGCAATCTCATCCCTACATGGCACCACAAATGTGGCCACAGCCACAACCAGACCAGCGACCATCTTCTCCAGAACATTAG 786 0.4707 MDHQGHNQNPSMGVVGSGAQLTYGSNPYQPGQITGAPGSVVTSVGAIQTSGQPAGAQLGQHQLAYQHIHQQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYCYMPPQHAPPVGTAGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPQPDQRPSSPEH. 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05342 261 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 64 198 - -
Seca2g05342 261 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 101 164 IPR003958 -
Seca2g05342 261 SUPERFAMILY Histone-fold 71 173 IPR009072 GO:0046982
Seca2g05342 261 MobiDBLite consensus disorder prediction 242 261 - -
Seca2g05342 261 FunFam Nuclear transcription factor Y subunit gamma 66 179 - -
Seca2g05342 261 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Seca2g05342 261 MobiDBLite consensus disorder prediction 245 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05342 Seca-Chr2 139904313 139907231 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05342 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.694 1.12e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Seca2g05342 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05342 K08066 - gmx:100527803 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05342 2 139904313 139907231 Seca2g05342 2 139904313 139907231 ECH
Seca8g06363 8 157890081 157892572 Seca2g05342 2 139904313 139907231 ECH
Seca8g06363 8 157890081 157892572 Seca2g05342 2 139904313 139907231 PCT