Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05325 ATGCACAGAGATATTAAGGGGGCCAATATTCTTGTAGATAATAAAGGGTGCATAAAACTTGCAGATTTTGGAGCATCCAAACAGGTCGTTGAGCTGGCTACCATTTCCGGTGCCAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGGCATAGCTTCTCTGCTGACATATGGAGCGTGGGTTGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGCCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACTAAATCTCATCCACCAATCCCTGATCATCTCTCTGTTGGAGCAAAAGATTTCCTGCTAAAGTGTTTGCACAAGGAACCATTTTTGAGGCCATCAGCATCAGAACTTCTGCAGCATCCCTTTGTCACCGGTGAACATATGGATTCTCTTCCTACGTCATCTACTGTCATGGAAAATCTTGGGGCTTCTTCACCGTCCCATGCTCCAAATGTTGAATCCTTACTTTGCGGCTCAACAATAAATCCCCTGGACTCGGGAAATAAACAGTCATGGGGAATGAGCAATGATGATGACATGTGTGAGATTGATGACGAAGAAGAGTTCTCAGAGTGTGATATCAAATGCAAACCATTGATGTCAGATAACATTGAGAGTTTCAACCCGATGTCTGATCCCTCTGATGATTGGGGGTGTAAATTTGGTGCAAGTCCAGAACTGGAACAAAGAGGAGTAGGTTTTGACACTGGTGAAAGTTACATGCCATCTGGTCAGTCGGGGGCTAACGAGGGGCAGAAAGATTTCTCCTTTCCATCTGTGACACCTCAGACACCATCCCTGTCAGAGGAAGATGATGAGCTCACAGAGTCAAAAATTAAAGCCTTTTTGGATGAGAAGGCTCTTGAACTGAAAAAACTGCAGACACCTTTATATGAAGAATTTTACAACAGTTTAAATACATCTTGTTCTCCCAAGGTGATTGATAGCATAAGTGATGATACTGCTGCTCGAAAGTTCTTGAAATTACCTCCTAAAAGCAGGTCACCTAGTCGGGTACCAATTAGCACTCCATCTAAAGCAGTTGAAAATGCTGGAAGTCCTGGAAGTAATGGCAGATCCTCATCAACTGTTGGCAATGTAAATAATCATGGCTCACAGGATATACCAGCATCTCCCCTTAATGAATTTAAAGGACTGATAGTTGACTCCCAGCAGGAGCCCAATAGCCCAAGTATAAACTTTTCTGAGAGACAAAGGAAGTGGAAAGAAGAGCTCGACCAGGAGCTCGAGAGAAAGCGAGAAATGATGCGCCAAGCTGGTATGGGGGGAAAGACATCTTCACCAAAGGATCGAGCTTTACATCGGCAGAGAGAACGGACAAGATTTGCTTCTCCCAGCAAATAA 1413 0.4437 MHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSVGAKDFLLKCLHKEPFLRPSASELLQHPFVTGEHMDSLPTSSTVMENLGASSPSHAPNVESLLCGSTINPLDSGNKQSWGMSNDDDMCEIDDEEEFSECDIKCKPLMSDNIESFNPMSDPSDDWGCKFGASPELEQRGVGFDTGESYMPSGQSGANEGQKDFSFPSVTPQTPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTSCSPKVIDSISDDTAARKFLKLPPKSRSPSRVPISTPSKAVENAGSPGSNGRSSSTVGNVNNHGSQDIPASPLNEFKGLIVDSQQEPNSPSINFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKDRALHRQRERTRFASPSK. 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05325 470 MobiDBLite consensus disorder prediction 352 392 - -
Seca2g05325 470 MobiDBLite consensus disorder prediction 255 284 - -
Seca2g05325 470 ProSiteProfiles Protein kinase domain profile. 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05325 470 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 161 - -
Seca2g05325 470 MobiDBLite consensus disorder prediction 254 289 - -
Seca2g05325 470 SUPERFAMILY Protein kinase-like (PK-like) 1 159 IPR011009 -
Seca2g05325 470 Gene3D Transferase(Phosphotransferase) domain 1 1 166 - -
Seca2g05325 470 MobiDBLite consensus disorder prediction 451 470 - -
Seca2g05325 470 Pfam Protein kinase domain 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05325 470 Coils Coil 421 441 - -
Seca2g05325 470 SMART serkin_6 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g05325 470 MobiDBLite consensus disorder prediction 343 470 - -
Seca2g05325 470 MobiDBLite consensus disorder prediction 404 418 - -
Seca2g05325 470 MobiDBLite consensus disorder prediction 419 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05325 Seca-Chr2 139824453 139830618 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05325 1 470 MAP Kinase Kinase Kinase AT1G54960 52.372 1.37e-144 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca2g05325 Pkinase 3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05325 K20606 - gmx:100807537 800.431