Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05321 ATGTTTTCTTCGTCATTAGAAGAAAGCAAAAGCGTTGGAGAAAAAATGTCAGATTCACAGTCAAATTCAGAGATTTTCAGTGTTCGTATTGTCTCCATCGACTATTACATAGCACCGCCTATCCCAGGCGCGGATATCTGTTACAGCAGCTTCCATGGTGGAAAAGTGAACGAGGTCCCAGTAATAAGAGTGTATGGTTCAACTCCTGCTGGCCAGAAGACTTGCTTGCACATACATGGAGCTTTACCTTATATGTATGTGCCGTGTTCAGATATACCACTTCAATTAGACCAAGGTGATGCATACACCTATAAGCTAGCTGCTTCTCTTGATAAAGCCTTGAAGCTAAAAGGCAGTGCTGGTTCAACGAGACAACATGTACATGGCTGCAGCCTTGTACGAGCAAGGAAATTTTATGGCTATCATTCATTTGAAGAATTATTCGTAAAGATATACCTATATTATCCTCAAGATGTCTCCCGTGCAGCTAATCTTCTCTTGGCTGGTGCCGTTCTTGATAAAGGTTTACAGCCACATGAATCACATATTCCCTTCATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCATTTGCACCTATCAAAGATGAGGTTCCGCCATCCCATACCAGATTCTTCTCACAAGAAATCAATTATTGATAGCCAGCATAGAAAGGCAGATCCGGATACTGATGCATGTTTAGAGTCAAAAGTGTGGATGTCTTCCATGATCCCATCTGACTGGATGTGGTCAGCCCCTAGTGAATTTGGTGCTTTGTCAAATGATAAGACTCACTGCCCTAAACGTCAAAGCATCTGTGAGCTTGAAGGAGATACTTCTGTAGATGAGATTCTTAATCAGCAGTTTAAAATGTATTCATCTCTCTCACAAACATGCTCAGATGTCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAACAGCAAAAACGAGCTGGGATTCGTGAGGCTACCATGCCTTCTGATCCTGGCAAACCACTTCCAGAAGATGTCATGAAACTTCTCTCTGTTGGTCTTGACTTTGAGAAAAAACTTATTGAATTGTGCAGTGAAGCTGAAACCTCTTTACTCTGTACTCCTTCTGAGAGGGAATTTAGAGAAACAGACATAATAGGTTCAGCATCACCACCAGCTTCATTGTGTGAAAAAGCCAAATTGCTTGAGGAAGGGACTGACACAGGTCTCAAATTGTTGACTATTGATGAAATGCAAACATCTGAAAAGATTGGAATGTTAGACATAAAGGCTGCTGATAAGGAAGCACAAAATCTTCTTAAGTGGCTTGCAACTTCTCAAGCTGCAGAGGATATAAACTCTGATGATGAACTTCTTTGTGAAACGATCTTGAGTCCCTTGTTACCTGCTGCAACAATTGATAAGGTGCTGGAGAAAGCTAATATGGCTTATGAGAGTGAGTCTCAGAAGGAGTGTCAGGATATTCTAGATTCAATTGATGATATGCTTGAATTGGATTTTCCAAAGGAAAAGCCTTCTTGTTCTGTAGATCACAATAGTCCTGTTAAGGCTTCATCAAACAGTATGATACCCCAAGTTGATGGTTCTAATGATGATGAATGCTCAAGTCCACGTGCTAGTTTGACTGGAACCTCTTCTGCAGTAGAGATAAACAGTGAATACAAAAGGGCTTCTGAGTGCCATATGCACAATACTGACACAAATATAGTTAGTACAGATAAAACGAATAAACAATGGGGGTCCTTGCCTTTTTCCATGACCAGTAAGGTTAATAATGATGGAGAGCATGCTACTTCACATCTGACCCATCCATTTGAAAGTGAAACTGGAGATTCTTCTCATTCAGATTACTTAACCAGAAGAAATAATGCTTGTATTATTAGAAAAGTGGGCGAAGGTGCTTCAGATTCAAAAGAAGTACATAGATTGGCTAGCTGCTCATTGCGGGACTTGATGAGGCGAAAGCGATCCTATCGAGTTGAACATGCTGAACATGAAACTGGAACTACTAAAAAACTTCTTTTAAATAGGCATGGGGGCCTTTGGCAAAAACAACTGGATATGAGAAAAATTCAAACCGATGAAGAAGAAACAGAGTGCCATAAAGATTGTGATCTTAAAGTGAGCAATCGTGATAATTTAGTTTGTGGGAAATTGTCACTACCTGCTGGCAGTAAAAGGTTTTTACAGGCTAGTATGCCAAGAGATGAATGTTTTGATCCCCATGAAATGGAGTGTCTAGAAGCAAGTATGGTGTTGAGGAACTCCACAAATGGAGGTTCTTCTTTAATGAGTGAAGGACCAGGCATCCATAAACTCGAAACTTTATGTTCTATTGATTCCATAGACCAATCTATAGCTTGCAGGGATAAAAACATTTTGGTTGGAACAGCTTATGCAAAACCTGTAGCTTCTGATGCCTATACCTCAAATCCAATTTTAGACACTCAGTTGAGAATGGATGCTGATCATAATGTCGGAGCTCCTGAGAGGAGTCAGCATACTGATTCTGCTGCTTCAAGTAGTGTACAGAACTCATCCATTGATGATAAAATGTCAGGCAAACATTATTGCATGGATCAAAGTTCTTGTATATGTTTTATGCAACATGATCAGATGAAGTTTTATGAGCATGCTGTGAGCATAAGTGCTGCAAGTGACACACAAGTATTGCTAAGTGAAAAAGTTGATAATCAAAAGATGGGTACAAATTTGTTGCATGAGACCATTGGCTCAAAATCCATTGCTGATGACATGAAGGGCGATCACGGCAAGAATCTTGAAAGTAATCTTCCCTTGCCAACTGTCTCTAACACCCATTTACATTTGGATGAGGACAGCTGTGATGAACTGCCAGGGAATGCTCGGGATGTTTTCCTTCCATTTTCTGGAAGGGATTCCCCAAAAGAGAAGGAAACTTGGGACAACTGTGTTTCAATTAAAACCCACAGATCTAATGGGACAAAGGGTATTACCACTCACTATCAAAACGATGGCTCTCACCTCTACTTATTAGCACCTAATATTTTGCCTCCTTCTGCGGGTTCTGTGCAGAGATGGCTATTTTATAATGAGAGAGGGCATACTCCTCATCAAATGCATCAAGAACCTGATACAGAGGACAAGGATGTACCTAATTGTGCTTCTGCACCTCCTCGTGGGCCTGAGCTGTATCAAGATGCTGGTTCAGAACAGAAGCCTCCATGCATTAGTGAAGGACAAACAAAAAGAGTAAAAGCAAGTCTAGATGGCTCACAAGATATTTCTCAGATATCAGGCCCTGATGGGAAATCAAGTTTTACCCCCCTTAGTCAAATCGGATTTCGAGACCCTGCAAGTGTTGGCCATGGACAGCAATTGACATTACTTAGTATAGAGGTTCTTGCAGAATCTAGAGGAGACCTTTTACCTGATCCTCAATTTGATGGCATCAACATTGTAGCTCTTGGTTTTCAGAATGATAGTGATTCTATTATTGAAGTTCTTGTTCTTTTGCATAGTAAATTTGACCCTTGTCAGAGAAGTTATGATGGTCTATCAGGCTGCAGAGTATTGGTCTTCACAGATGAGAAGCACTTGTTGAAAGAATTTATAAAGATTGTGTCTTCATCTGATCCAGATATTTTGATGGGTTGGGATGTTCAGGGGAGTTCTCTTGGTTTTCTAGCAGAAAGGGCTTCACATCTTGGTTTAGGATTACTTAATGGTTTGTCTCGCACTCCATCTGATTCTTGGAGTGCTTCTGAAGACACCAAAACTTCTGAGAAAGGTATTGTGGACCTGGACATCCCTGATACCCCCAGTCTACATAGTTGTACACAAGAAAGTTCAATAATTGAGGATGAATGGGGACGAACACATGCCAGTGGAGTTCATGTAGGTGGCAGAATTGTCCTTAATGTATGGCGATTGATTCGTGGAGAAGTTAAGCTGAATTTGTATTCAGTTGAAGCTGTAGCTGAAGCTGTATTGAGGCGGAAAATTCCTTTATTTCATCACAAGGTGCTGACAAAATGGTTTTCAAGTGGTCCTGGACGAGCAAGACATCAGTGTATGAAATATCTTATAGAGAGAGCAAAGCTGAACCTTGAGATATTAAACCAACTTGATATGGTGAATCGAACATCAGAACTTGCTCGTGTCTTTGGCATAGACTTTTTCTCTGTTCTCTCTCGAGGTTCACAATATCGTGTTGAATCCATGTTTTTGAGGTTGGCCCATACACAAAACTATGTTGCTATCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCTATGGAATGCCTGCCGCTAGTGATGGAACCAGAGTCAGGATTTTATTCAGATCCTGTTGTTGTTCTTGATTTCCAATCTTTATATCCATCAATGATAATTGCATACAACCTTTGCTTTTGTACATGTCTTGGCAAAGTTGTGGCATCAAAGGCTAACACACTTGGGGTTAGTTCATTTTCACCAGAGCAACATGTTCTTCAGGATCTAAAAGACCAAATCTTGCTCAGTCCAAATGGTGTTATGTTTGTACCTCCCAAGGTTAGAAGAGGGGTTCTGCCTCGCTTATTGGATGAAATCTTATCAACTAGAATAATGGTAAAACAAGCAATGAAAAAGTTGGCTCCTTCAGAGCAAGTTCTTCAGCGGATATTTAATGCAAGACAACTTGCTTTGAAGCTTATATCAAATGTAACATATGGTTACACTGCTGCTGGATTTAGCGGTCGGATGCCTTGTGCAGAACTTGCAGACAGTATCGTTCAATGTGGCCGTAGTACACTGGAAAAGGCTATATCATTTGTGAATCTACATGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAAAGGACGCACTATCAAAGAGTCCTTCCAAATTGGGAGTGAGATTGCTTCTACTATCACTGCTATGAATCCCAGTCCTGTTACCCTGAAGATGGAGAAAGTTTATCATCCGTGCTTCCTCCTTACTAAAAAGCGTTATGTTGGCTACAGTTATGAAAGCCCTGATCAAATTGAACCCGTTTTTGATGCTAAAGGTATTGAGACAGTACGCAGGGACACATGTGGTGCAGTTGCAAAGACAATGGAGCAGTCTTTGAGACTCTTTTTTGAACATCAAGATTTATTGGAGGTGAAGACTTATTTGCAGCGTCAGTGGAAGAGGATTCTTTCAGGCAGATTCTCCCTTAAAGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGGATCTCATCACTTCCTCCTGCTGCAATTGTGGCTACTAAGGCAATGAGGATTGATCCTAGGGCAGAACCACGTTATGCTGAGAGAATACCTTATGTTGTAATCCATGGAGAGCCCGGAGCCCGCCTGGTTGATATGGTTGTGGATCCATTGGAAGTTTTGGCAATTGATTCCCCATTTAGAATAAATGATTTATATTATATTAATAAACAAATAATACCAGCTTTACAGCGGGTGTTTGGGCTTGTTCGTGCTGACCTGAACCAGTGGTTTGCAGAGATGCCCCGCCCTATAAGGGAAGCTTCTGCAAAGCATACCTTCGCTCCAAATTCCCATCGAACCAGAATTGATTCTTACTATCTCTCAAAACATTGTGTACTGTGTGGTGGGTTGGTCCAGGCATCAGCTCGTTTATGTAGTCAATGTTCTGAAAATGAAGTAGCTGCTGCAACAGCAGTGATTAGTAAGACTAAAAATTTAGAGCAAGAGATGCAACGCCTTGTTGCTATATGTCACCATTGCGGAGGCGGGGATAGGCTTCTCGAAAGTGGTGTAAAGTGCACGTCCATTTCTTGCTCGGTGTTCTATGAGAGGCGGAAAGTTCAGAAAGAACTACTAGCTGCCACCAATGTTGCTACAGGTAAAGGCTTCTATCCAAGATGTACGATGGAATGGTTCTGA 5946 0.4107 MFSSSLEESKSVGEKMSDSQSNSEIFSVRIVSIDYYIAPPIPGADICYSSFHGGKVNEVPVIRVYGSTPAGQKTCLHIHGALPYMYVPCSDIPLQLDQGDAYTYKLAASLDKALKLKGSAGSTRQHVHGCSLVRARKFYGYHSFEELFVKIYLYYPQDVSRAANLLLAGAVLDKGLQPHESHIPFILQFLVDYNLYGMGHLHLSKMRFRHPIPDSSHKKSIIDSQHRKADPDTDACLESKVWMSSMIPSDWMWSAPSEFGALSNDKTHCPKRQSICELEGDTSVDEILNQQFKMYSSLSQTCSDVNMVQSLVPIWEEQQKRAGIREATMPSDPGKPLPEDVMKLLSVGLDFEKKLIELCSEAETSLLCTPSEREFRETDIIGSASPPASLCEKAKLLEEGTDTGLKLLTIDEMQTSEKIGMLDIKAADKEAQNLLKWLATSQAAEDINSDDELLCETILSPLLPAATIDKVLEKANMAYESESQKECQDILDSIDDMLELDFPKEKPSCSVDHNSPVKASSNSMIPQVDGSNDDECSSPRASLTGTSSAVEINSEYKRASECHMHNTDTNIVSTDKTNKQWGSLPFSMTSKVNNDGEHATSHLTHPFESETGDSSHSDYLTRRNNACIIRKVGEGASDSKEVHRLASCSLRDLMRRKRSYRVEHAEHETGTTKKLLLNRHGGLWQKQLDMRKIQTDEEETECHKDCDLKVSNRDNLVCGKLSLPAGSKRFLQASMPRDECFDPHEMECLEASMVLRNSTNGGSSLMSEGPGIHKLETLCSIDSIDQSIACRDKNILVGTAYAKPVASDAYTSNPILDTQLRMDADHNVGAPERSQHTDSAASSSVQNSSIDDKMSGKHYCMDQSSCICFMQHDQMKFYEHAVSISAASDTQVLLSEKVDNQKMGTNLLHETIGSKSIADDMKGDHGKNLESNLPLPTVSNTHLHLDEDSCDELPGNARDVFLPFSGRDSPKEKETWDNCVSIKTHRSNGTKGITTHYQNDGSHLYLLAPNILPPSAGSVQRWLFYNERGHTPHQMHQEPDTEDKDVPNCASAPPRGPELYQDAGSEQKPPCISEGQTKRVKASLDGSQDISQISGPDGKSSFTPLSQIGFRDPASVGHGQQLTLLSIEVLAESRGDLLPDPQFDGINIVALGFQNDSDSIIEVLVLLHSKFDPCQRSYDGLSGCRVLVFTDEKHLLKEFIKIVSSSDPDILMGWDVQGSSLGFLAERASHLGLGLLNGLSRTPSDSWSASEDTKTSEKGIVDLDIPDTPSLHSCTQESSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVEAVAEAVLRRKIPLFHHKVLTKWFSSGPGRARHQCMKYLIERAKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYVAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVASKANTLGVSSFSPEQHVLQDLKDQILLSPNGVMFVPPKVRRGVLPRLLDEILSTRIMVKQAMKKLAPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNLHEKWNAKVIYGDTDSMFVLLKGRTIKESFQIGSEIASTITAMNPSPVTLKMEKVYHPCFLLTKKRYVGYSYESPDQIEPVFDAKGIETVRRDTCGAVAKTMEQSLRLFFEHQDLLEVKTYLQRQWKRILSGRFSLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMRIDPRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFGLVRADLNQWFAEMPRPIREASAKHTFAPNSHRTRIDSYYLSKHCVLCGGLVQASARLCSQCSENEVAAATAVISKTKNLEQEMQRLVAICHHCGGGDRLLESGVKCTSISCSVFYERRKVQKELLAATNVATGKGFYPRCTMEWF. 1982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05321 1981 MobiDBLite consensus disorder prediction 1031 1045 - -
Seca2g05321 1981 FunFam DNA polymerase 1129 1430 - -
Seca2g05321 1981 FunFam DNA polymerase 1689 1857 - -
Seca2g05321 1981 FunFam DNA polymerase 45 210 - -
Seca2g05321 1981 MobiDBLite consensus disorder prediction 513 545 - -
Seca2g05321 1981 ProSitePatterns DNA polymerase family B signature. 1614 1622 IPR017964 GO:0000166|GO:0003676
Seca2g05321 1981 Pfam DNA polymerase family B 1388 1835 IPR006134 GO:0000166|GO:0003677
Seca2g05321 1981 MobiDBLite consensus disorder prediction 828 852 - -
Seca2g05321 1981 SUPERFAMILY DNA/RNA polymerases 1434 1847 IPR043502 -
Seca2g05321 1981 PRINTS DNA-directed DNA-polymerase family B signature 1556 1568 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca2g05321 1981 PRINTS DNA-directed DNA-polymerase family B signature 1612 1620 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca2g05321 1981 PRINTS DNA-directed DNA-polymerase family B signature 1447 1460 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca2g05321 1981 Pfam C4-type zinc-finger of DNA polymerase delta 1880 1953 IPR025687 -
Seca2g05321 1981 MobiDBLite consensus disorder prediction 597 618 - -
Seca2g05321 1981 MobiDBLite consensus disorder prediction 1031 1077 - -
Seca2g05321 1981 FunFam DNA polymerase zeta 1514 1573 - -
Seca2g05321 1981 MobiDBLite consensus disorder prediction 833 852 - -
Seca2g05321 1981 Gene3D - 1153 1430 IPR036397 GO:0003676
Seca2g05321 1981 SMART polmehr3 1120 1626 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca2g05321 1981 Gene3D - 1689 1852 IPR042087 -
Seca2g05321 1981 CDD POLBc_zeta 1395 1843 - -
Seca2g05321 1981 SUPERFAMILY Ribonuclease H-like 43 1393 IPR012337 -
Seca2g05321 1981 Gene3D DNA Polymerase, chain B, domain 1 45 210 - -
Seca2g05321 1981 MobiDBLite consensus disorder prediction 505 545 - -
Seca2g05321 1981 Gene3D Helix hairpin bin 1514 1573 - -
Seca2g05321 1981 CDD DNA_polB_zeta_exo 1119 1369 - -
Seca2g05321 1981 MobiDBLite consensus disorder prediction 601 617 - -
Seca2g05321 1981 Gene3D Palm domain of DNA polymerase 1433 1678 IPR023211 -
Seca2g05321 1981 Pfam DNA polymerase family B, exonuclease domain 1138 1260 IPR006133 -
Seca2g05321 1981 Pfam DNA polymerase family B, exonuclease domain 70 210 IPR006133 -
Seca2g05321 1981 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 20 1974 IPR030559 GO:0006281|GO:0016035|GO:0019985
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05321 Seca-Chr2 139766683 139784513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05321 54 209 Core DNA Replication Machinery Family AT5G63960 25.466 2.25e-10 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05321 K02350 - gmx:100777934 3135.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05321 2 139766683 139784513 Seca2g05321 2 139766683 139784513 ECH