Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05319 ATGGCACCTACAAGGAAACCTAGAAGTATGAACAAGCGGTTTTCAGGTTTGAATGAAATTTTGCCTGAGAAAGATGGAGTTAGCTCAAATAAAAAAAAGCAAAGGAAGAAAAAGCTGTCTGATAAATTGGGATCTCAATGGAACAAGGAGGAACTAGAGAGGTTTTATGAAGCGTACAGGAAGTACAGGAAAGACTGGAAGAAGGTGGCTGCAGTTGTACGCAACAGGTCTGTTGAAATGGTGGAGGCTCTTTACAATATGAATCGGGCATACCTATCTCTGCCAGAGGGGACAGCTTCTGTTGTTGGCCTAATTGCAATGATGACAGATCACTATAATGTGCTGGAAGAGAGTGACAGTGAAAGGGAGAGCAATGATGCATCAGGATCTGGAAAGCCTATGAAACGAAAGCGTAGAAAAATTCAGCTTAGCATAGAAAAAGATTCTGTCCAGTCTCCATTGATTGCTTCAAATGATGGTTGCCTCTCTCTTTTGAAGAGAAGACGATTCGATGGCAGCCAACCTCGAGCAGTTGGGAAAAGGACACCTCGCATCCCAGTTAACTACTCTTATAAGAAAGATGACAGGGAAAATTATTTTTCACCTAATAAAAGAAGGCTAAAGTCAGCTTTTGATGTTAATGATGATGAAGTTGCACATGTTGCAGCTCTGGCATTAACTGAGGCTGCACAAAGAAGTGGCTCTCCCCAAGTATCTCATATGCCATACAAAAGATCAGAGCAGAAGCCCTCTCCTGTTGGGACCTGGGGAAGAATGCACCAAGAGTCTGAGACAGTTCCTGGCAAGTTTTATGACACTTATGTGGATGAAGAGTGCTTGGAAGGTAGCATAGAAAGCAGGGGAGCTGAAAACGGCGAATATGCTAGAGCTGCTAGTTCCTTGATGAATGTGGAAGGCATAGGCACTGTTAAAGTTCATCAGAAAGGGAAAAAAAATTATGGAAAGAAGGAAAGAGGGGAAGCTGTTGGAAATCATCTTCTTGATGAGGGTGGAGAAGCATGTAGCGGCACTGAAGAAGGACTTAATTTTAGTTTGAAGGAAAAGGTTGATATTGAGGTTACTAATGCCAAACCAGAGCAATTCTCACTAAAAGGTCAGAGGAAAAGAAGCAAAAAACTTTTCTCTGGAGATGAAAGCTCTGCCTTGGATGCTTTGCAAACTTTGGCTGATTTGTCTCTAATGATACCGGCGTCTACAATGGAATCTGAATCATCAGTCCAATTGAAAGAAGAAAAAATGACTGTTGATAAAGATGAAAAGTCTGCTTTACCTGAAGGCACATCAACAAGCCAAAACAGAGATAAAATTAAACTCCCAGGTTTGAAACAAAAGATTGTTCATGCAGTCCATGGAGTTGAGATTTCAACCTCCAAAAAATCAAAACTTGGTGGGGAATCAGTAGATGATGCTAACGCTCTCTTTGAATCAAAAGAGCAGTTTACCTCTGCTGATAGAACATGGAAAAGAAAGCGCAAATCCATGGTTTCAAAGGTAGCAAATGCAAAGCTTGGTTTTTATCCAAGTGATCCCTTGAATAATGAGGTTGTAGATGAAGAGAATAAGCCAGTGATTATAGGAAAACACACTGATCAGATTTTCACTCTGGCAAAACAATTGAAGTCAGTCAGATCATCAGAAAGTTCCCTGTGTAGTGACCAGAAAGATTTGAGAGTATCAACTGCAGAAATTCTACCTGTGAAAGAAGTTAGTTCATCTACTAAACAAAGAAATAGACATAAGATGAGTTCACAGAAATCGTTCATGCCTAAAGAGAAATCTTCTGAGAACATATTGAAAAGTCACCCTAATAAGTATTTGACCCCTGTCCAAGATAGGGCATTATTTATAAAGGAAAAGCTTTCAGGTTGCTTGTCATCTTATATGCTTCGCAGATGGTGTATGTTTGAATGGTTTTATAGCGCAATCGATTATCCGTGGTTTTCCAAAAGGGAGTTCATGGAGTACTTAAATCATGTTGGTCTAGGGAATATCCCGAGGTTAACACGTGTTGAGTGGAGTGTCATAAAAAGTTCCCTTGGCAAACCTCGCAGGTTTTCTGAACACTTTCTCCATGAAGAAAGAGAAAAACTTGAACAGTATCGGGAATCTGTTAGGAAACATTACACTGAACTGCGGACTGGTATGAAAGATGGACTTCCAACAGATTTAGCTAAACCTTTATATGTTGGACAACGAGTGATTGCTCTTCACTCAAAAACAAGAGAGATTCATGATGGAAGTGTGCTTACAGTTGACCATGAGAAATGCAGGGTTCAGTTTGACCGTCCTGAATTGGGTGTTGAATTTGTCAAGGACATTGATTGCATGCCTTTGAATCCACTGGATAATTTGCCAGAAGCTCTGAGGAGGCAGATTGGTGCTGCTAAAGTACCTTGTATGAGTAAAGAACCACATATGAAAGGAAATTCAAGTTTTGGGGGGTGCGTGACATGTGCTTCAAATGGACCTGTGGGGAAGGCACCCACCTTGTCAAGTACTTTGGCTAAACAGGAAAAGGCTGATGTTAACCCTTCAGTTGCCCAAACAAAGGCTGGTGTTATTGATCACTTCTATACACAACAAGCAGTGTATACTCAACCTTGTATAGGGACAAATGATCAAGCTAAGGAAGCTGACATACATGCCCTTTCTGAGCTGACGCATGCTCTAGATAAAAAGGAGAGATTGTTGATGGAACTTAAAAATGCAAATGACATGATGGAAAATCAGAATGACACAGACTGCTTCAAAGATTCAGATGCTTTCAGGAAGCATTACGCCACGGTACTTGTACAGCTAAAGGAAGCCAGTGGACAGGCATGTGGCTTCCATGGATTATTAATTTATTTTTTGTTATTACAACAGTCTGCCTTGACATTGAAAGAACTTATGATTGATTATTTCCTTTTCAGGTTTCCAATGCCCTGCTTCATTTGA 2958 0.4053 MAPTRKPRSMNKRFSGLNEILPEKDGVSSNKKKQRKKKLSDKLGSQWNKEELERFYEAYRKYRKDWKKVAAVVRNRSVEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSERESNDASGSGKPMKRKRRKIQLSIEKDSVQSPLIASNDGCLSLLKRRRFDGSQPRAVGKRTPRIPVNYSYKKDDRENYFSPNKRRLKSAFDVNDDEVAHVAALALTEAAQRSGSPQVSHMPYKRSEQKPSPVGTWGRMHQESETVPGKFYDTYVDEECLEGSIESRGAENGEYARAASSLMNVEGIGTVKVHQKGKKNYGKKERGEAVGNHLLDEGGEACSGTEEGLNFSLKEKVDIEVTNAKPEQFSLKGQRKRSKKLFSGDESSALDALQTLADLSLMIPASTMESESSVQLKEEKMTVDKDEKSALPEGTSTSQNRDKIKLPGLKQKIVHAVHGVEISTSKKSKLGGESVDDANALFESKEQFTSADRTWKRKRKSMVSKVANAKLGFYPSDPLNNEVVDEENKPVIIGKHTDQIFTLAKQLKSVRSSESSLCSDQKDLRVSTAEILPVKEVSSSTKQRNRHKMSSQKSFMPKEKSSENILKSHPNKYLTPVQDRALFIKEKLSGCLSSYMLRRWCMFEWFYSAIDYPWFSKREFMEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLHEEREKLEQYRESVRKHYTELRTGMKDGLPTDLAKPLYVGQRVIALHSKTREIHDGSVLTVDHEKCRVQFDRPELGVEFVKDIDCMPLNPLDNLPEALRRQIGAAKVPCMSKEPHMKGNSSFGGCVTCASNGPVGKAPTLSSTLAKQEKADVNPSVAQTKAGVIDHFYTQQAVYTQPCIGTNDQAKEADIHALSELTHALDKKERLLMELKNANDMMENQNDTDCFKDSDAFRKHYATVLVQLKEASGQACGFHGLLIYFLLLQQSALTLKELMIDYFLFRFPMPCFI. 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05319 985 SMART DIRP_2 645 746 IPR033471 -
Seca2g05319 985 Gene3D - 4 99 - -
Seca2g05319 985 Coils Coil 697 717 - -
Seca2g05319 985 MobiDBLite consensus disorder prediction 116 139 - -
Seca2g05319 985 SUPERFAMILY Homeodomain-like 41 90 IPR009057 -
Seca2g05319 985 MobiDBLite consensus disorder prediction 412 430 - -
Seca2g05319 985 ProSiteProfiles SANT domain profile. 42 79 IPR017884 -
Seca2g05319 985 Pfam DIRP 644 744 IPR033471 -
Seca2g05319 985 PANTHER LIN-9 1 947 IPR010561 GO:0006351|GO:0017053
Seca2g05319 985 FunFam Protein ALWAYS EARLY 3 isoform A 3 99 - -
Seca2g05319 985 MobiDBLite consensus disorder prediction 1 43 - -
Seca2g05319 985 MobiDBLite consensus disorder prediction 116 132 - -
Seca2g05319 985 MobiDBLite consensus disorder prediction 576 599 - -
Seca2g05319 985 CDD SANT 47 88 IPR001005 -
Seca2g05319 985 Pfam Myb-like DNA-binding domain 45 82 IPR001005 -
Seca2g05319 985 SMART sant 43 91 IPR001005 -
Seca2g05319 985 MobiDBLite consensus disorder prediction 408 440 - -
Seca2g05319 985 Coils Coil 890 920 - -
Seca2g05319 985 MobiDBLite consensus disorder prediction 232 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05319 Seca-Chr2 139740154 139750605 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca2g05319 DIRP 4.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05319 - - gmx:100789533 1229.93